Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07870 593 / 0 Protein kinase superfamily protein (.1.2) AT2G28590 553 / 0 Protein kinase superfamily protein (.1) AT5G02800 514 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 505 / 1e-177 Protein kinase superfamily protein (.1.2) AT5G13160 483 / 6e-170 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 432 / 9e-151 Protein kinase superfamily protein (.1) AT1G20650 418 / 1e-145 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G24790 415 / 2e-144 Protein kinase superfamily protein (.1) AT1G61860 413 / 3e-143 Protein kinase superfamily protein (.1) AT3G07070 407 / 9e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234100 [exp] 719 / 0 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 541 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 533 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 523 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 507 / 2e-178 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 506 / 3e-178 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 491 / 8e-173 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 489 / 3e-172 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 449 / 1e-157 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041426 [exp] 516 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 510 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 509 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 509 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 503 / 1e-176 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 502 / 1e-176 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 493 / 7e-174 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 484 / 1e-171 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 482 / 2e-169 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 425 / 1e-147 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G026500.3 pacid=42772236 polypeptide=Potri.009G026500.3.p locus=Potri.009G026500 ID=Potri.009G026500.3.v4.1 annot-version=v4.1 ATGGGTTTTCTTTGCTGCAGTGGGAAACCGAGCAAGCGATCAGAGAGCAGCAGCATCAATGAAAATAACAGTAACATTAAGCGCAAGGATCAAACACAAG TCACTTCGGGGTCATTGAAAATGAAGCCATATGTGAACAATTTAAGTAAAGAGGGGGGATCTAAGGATGATCAATTGTCATTGGATGTAAAGAGTTTAAA TATGAAGGATGAGATTTCTAAGGATAGAAGAAGCAATGGAAAACAGGCTCAAACTTTTACTTTTGAGGAACTTGCGGCCGCAACGAGCAATTTTAGGTCT GATTGTTTTTTGGGTGAAGGAGGTTTTGGTAAGGTTTACAAAGGGTACCTGGACAAAATCAACCAGGCTGTTGCTATCAAGCAACTTGATCGAAATGGAG TTCAGGGGATTAGGGAGTTTGTAGTTGAAGTAGTGACTTTAAGTCTAGCAGACCATCCAAATCTTGTCAAGTTGATTGGGTTTTGTGCTGAGGGAGATCA GAGGCTATTGGTTTATGAGTACATGCCATTAGGATCTCTGGAAAATCATTTACATGATATTCCACCCAATAGGCAACCGCTTGATTGGAACGCAAGAATG AAAATAGCTGCTGGTGCAGCAAAAGGTTTAGAGTATTTGCACAATGAAATGGAACCTCCTGTTATATATCGCGACTTAAAATGCTCCAACATTTTGCTTG GCGAGGGCTATCATCCTAAGTTATCTGATTTTGGTCTGGCAAAAGTGGGACCCAGCGGAGATAAGACTCATGTTTCTACAAGGGTTATGGGCACCTACGG ATACTGTGCACCAGATTATGCAATGACAGGTCAGCTGACGTTTAAATCAGATATTTATAGCTTCGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAA GCAATTGATCAAAGAAAAGAACGTGGTGAGCAGAATCTAGTTGCATGGGCACGACCCATGTTCAAAGACCGGAGGAACTTCTCATGCATGGTTGACCCTT TGCTTCAAGGTCAATATCCAATAAGAGGATTATACCAAGCCCTCGCCATTGCCGCAATGTGTGTGCAGGAGCAGCCCAATATGCGCCCTGCGGTATCCGA TTTGGTTATGGCTCTGAACTATCTGGCATCTCACAAATATGATCCCCAAATCCATTCTGTCCAAGACTCTCGGAGGAGCCCATCTCGTCCTGGATTAGAT AAGGACAGAGGACAATAG
AA sequence Show only first row Show all	>Potri.009G026500.3 pacid=42772236 polypeptide=Potri.009G026500.3.p locus=Potri.009G026500 ID=Potri.009G026500.3.v4.1 annot-version=v4.1 MGFLCCSGKPSKRSESSSINENNSNIKRKDQTQVTSGSLKMKPYVNNLSKEGGSKDDQLSLDVKSLNMKDEISKDRRSNGKQAQTFTFEELAAATSNFRS DCFLGEGGFGKVYKGYLDKINQAVAIKQLDRNGVQGIREFVVEVVTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDIPPNRQPLDWNARM KIAAGAAKGLEYLHNEMEPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRK AIDQRKERGEQNLVAWARPMFKDRRNFSCMVDPLLQGQYPIRGLYQALAIAAMCVQEQPNMRPAVSDLVMALNYLASHKYDPQIHSVQDSRRSPSRPGLD KDRGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	0	1
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	3.46	0.7519
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	7.87	0.7639
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	8.36	0.7480
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	13.85	0.7470
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	17.94	0.7135
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G327100 [exp]	18.33	0.7500	TCP20.1
AT3G22260			Cysteine proteinases superfami...		Potri.006G021700 [exp]	19.07	0.6881
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	19.20	0.7398
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	19.26	0.7401
AT4G16530			Family of unknown function (DU...		Potri.001G123200 [exp]	19.28	0.7269

Compare expression of checked genes

Potri.009G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.