Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46200 410 / 3e-145 ATNUDT9 nudix hydrolase homolog 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005433 [exp] 399 / 7e-141 AT3G46200 363 / 1e-126 nudix hydrolase homolog 9 (.1) Lus10015223 [exp] 388 / 4e-136 AT3G46200 353 / 7e-122 nudix hydrolase homolog 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.009G026700.1 pacid=42771528 polypeptide=Potri.009G026700.1.p locus=Potri.009G026700 ID=Potri.009G026700.1.v4.1 annot-version=v4.1 ATGGAGAAAACAAACTACGAACTTGTGCTCTCATGCCCCTCTGGTCTCTCGCCTTCTCAGGTATCTGTGGTTTTTGATCCATCTTACGATAGAATCGCCC ATCCTGACATTGAATTAGAAAACTCCATTTCTGAGATATGGGATCAGAGGGTACAGAAGAATGCATCTTTGTTCAATGGGAAAAAGTTCCGGTATGGAGG GTATACACTGTGCAACAGAGGTGGATCACAACAAGATTTTCATGTGTGTCTCCACCTTGGTTTGACAGATTATAGGACTTTTGTGGGAACAAACTTAAAT CCTCTTTGGGAAAAGTTCCTTGTTCCATCAGAAGATGACCTTATGCAGTGTCAACACACCTCAAGTCCACTGGGTAATGGTGCAATTTTAGAGACATCTG ACAAGAAAATAGTTGTGTTACAAAGAAGTTACAATGTAGGGGAATTTCCTGGACACATTGTTTTCCCTGGAGGCCATCCAGAGCCTGAAGAAGTTGGAGC AGCATCTCATCAGATGGGTGAACGCTTAACAAACTCAGAACACAATAACACCAAGGTCTCTCAAGAAATGTTTGATAGTATAATTCGTGAAGTAGTTGAA GAAATTGGAGTACCTGTGACCTCTCTTTGCAATCCACTATTTATTGGTATATCCCGCAGGGTGTTAAACGTCAGACCAGCTGCTTTTTTCTTCATCAAAT GTAACATCGAGTCAAAAGAAATTCAACGACTGTATGCTGGTGCACAAGATGGTTATGAATCAACCCAACTTTACACAGTTTCATTGATTGAATTAGAAAA CATGGCATCTAAAATGCCTGGCTGCCATCAAGGTGGATTTGCTCTCTATAAGCTGATGTTGGAAGCTATGAAGAATTTCTGA
AA sequence Show only first row Show all	>Potri.009G026700.1 pacid=42771528 polypeptide=Potri.009G026700.1.p locus=Potri.009G026700 ID=Potri.009G026700.1.v4.1 annot-version=v4.1 MEKTNYELVLSCPSGLSPSQVSVVFDPSYDRIAHPDIELENSISEIWDQRVQKNASLFNGKKFRYGGYTLCNRGGSQQDFHVCLHLGLTDYRTFVGTNLN PLWEKFLVPSEDDLMQCQHTSSPLGNGAILETSDKKIVVLQRSYNVGEFPGHIVFPGGHPEPEEVGAASHQMGERLTNSEHNNTKVSQEMFDSIIREVVE EIGVPVTSLCNPLFIGISRRVLNVRPAAFFFIKCNIESKEIQRLYAGAQDGYESTQLYTVSLIELENMASKMPGCHQGGFALYKLMLEAMKNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Potri.009G026700 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	7.54	0.7230
AT3G11780			MD-2-related lipid recognition...		Potri.016G067800 [exp]	11.48	0.6639
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.007G101500 [exp]	14.03	0.7556	Pt-ATHDH.3
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	19.89	0.6975
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.015G089201 [exp]	20.97	0.6832
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.006G240900 [exp]	24.89	0.6370
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	37.54	0.6229
AT5G45360			F-box family protein (.1)		Potri.004G236200 [exp]	74.16	0.6209
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	84.85	0.6292	Pt-ATRPABC16.2
AT5G28830			calcium-binding EF hand family...		Potri.013G040500 [exp]	90.09	0.6555

Compare expression of checked genes

Potri.009G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.