Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 661 / 0 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 647 / 0 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 493 / 7e-173 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G01120 348 / 3e-115 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G46720 337 / 1e-111 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G25450 332 / 2e-109 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G26640 330 / 4e-108 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G43760 327 / 1e-106 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G04220 327 / 1e-106 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G68530 325 / 1e-106 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234500 [exp] 804 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 532 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 526 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 496 / 5e-174 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 479 / 1e-167 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 449 / 7e-156 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 345 / 9e-114 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 343 / 5e-113 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G079500 [exp] 340 / 6e-112 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005434 [exp] 680 / 0 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 676 / 0 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10004918 [exp] 551 / 0 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040873 [exp] 541 / 0 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10023458 [exp] 513 / 3e-180 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 511 / 2e-179 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 458 / 5e-159 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 456 / 2e-156 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 418 / 5e-143 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 402 / 2e-133 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.009G026800.1 pacid=42771841 polypeptide=Potri.009G026800.1.p locus=Potri.009G026800 ID=Potri.009G026800.1.v4.1 annot-version=v4.1 ATGGATTTTCTCTTGTTAGTATATGCTTTCCTAATCTTCTATCCTCTCTTCGTGTTATGGAGGGGGATTGATAGGAAAAGGGACCGAGAATGTTATATAC TAGACTATGAGTGCTACAAACCAACAGATGACAGGAAGCTTGACACAGAGTTTTCTGGGAAAGTGATAATGAGGAGTAAACAGCTTGGTCTTAACGAGTA CAAGTTTCTGTTGAAAGCTATTGTGAGCTCTGGAATTGGGGAGCAAACCTATGGTCCCAGGATCATGTTCAAAGGCCAAGAGGAAAACCCTACATTACAA GATTCAGTTTCTGAGGTGGAGGAGTTCTTTCATGACAGCATCGAAAAGCTCTTGGCCAGGTCAGGCATTTCTCCTAGAGAAATTGATGTTCTTGTAGTTA ATGTCTCCATGCTGTCTTCCGTGCCTTCTTTAGCTGCTAGGATCATAAATCACTATAAACTAAGGGAGGATGTTAAGGTTTTTAACCTCTCTGGGATGGG TTGTAGTGCAAGCCTTATATCAGTCGACATTGTCCAAAACGTTTTCAAGAGTTGCAAGAATGTTTATGCGCTTGTTGTCACCTCGGAGTCTTTAAGCCCT AATTGGTACTCAGGGAATGATAGATCGATGATTCTTGCAAATTGTTTGTTCCGATCTGGTGGGTGTGCCATCCTTTTGACTAACAAAAGGGCCTTAAAGC ACCGAGCCATGTTCAAATTGAAGTGCCTAGTTAGGACACACCATGGGGCTAGAGACGAGTCATATGACTGTTGCCTTCAAAGAGAAGACGAGCAAGGGCG CCTAGGGTTTCACCTAGGCAAGTCACTACCAAAGGCCGCTACACGAGCTTTGGTCGACAACCTTAGAGAAATAACCCCAAAGATCTTGCCAGTAAGGGAG CTACTTAGATTTATGGTGGTGTCATTCATACGGAAATATTGGAGCCATAGATCCACGAAGGGAGTAGTCAGTCCTAAACCTGTGATTAACTTCAAGACCG GTGTTGATCACTTCTGCATCCACACCGGTGGCAAGGCGGTGATAGACGGGATTGGCGTTAATCTTGATCTCACCGAGTATGATCTGGAGCCAGCAAGAAT GACATTGCACAGGTTTGGCAACACATCTGCTAGCAGTCTTTGGTATGTTTTGGGATACATGGAGGCCAAAAAGAGGCTAAAGAGAGGCGATAGGGTTCTG ATGATGAGTTTTGGTGCGGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGGTGAGAGACTTGGATGCAGATAACGTGTGGAAGGACTGCATTGATAGCT ATCCACCAAAGTCACTGGCCAATCCATTCATGGAGAAGTTTGGGTGGATAAACAATGAAGATCCAAGCACTTTTGTAATGCGTTAA
AA sequence Show only first row Show all	>Potri.009G026800.1 pacid=42771841 polypeptide=Potri.009G026800.1.p locus=Potri.009G026800 ID=Potri.009G026800.1.v4.1 annot-version=v4.1 MDFLLLVYAFLIFYPLFVLWRGIDRKRDRECYILDYECYKPTDDRKLDTEFSGKVIMRSKQLGLNEYKFLLKAIVSSGIGEQTYGPRIMFKGQEENPTLQ DSVSEVEEFFHDSIEKLLARSGISPREIDVLVVNVSMLSSVPSLAARIINHYKLREDVKVFNLSGMGCSASLISVDIVQNVFKSCKNVYALVVTSESLSP NWYSGNDRSMILANCLFRSGGCAILLTNKRALKHRAMFKLKCLVRTHHGARDESYDCCLQREDEQGRLGFHLGKSLPKAATRALVDNLREITPKILPVRE LLRFMVVSFIRKYWSHRSTKGVVSPKPVINFKTGVDHFCIHTGGKAVIDGIGVNLDLTEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKRGDRVL MMSFGAGFKCNSCLWEVVRDLDADNVWKDCIDSYPPKSLANPFMEKFGWINNEDPSTFVMR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	0	1
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	3.16	0.9450	APFI.1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	4.47	0.9154	Pt-I.1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	5.29	0.9190
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	8.00	0.9138
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.001G263700 [exp]	8.48	0.9171
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	11.22	0.9179	Pt-FLA8.1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	13.03	0.9006
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	13.41	0.9065
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	16.61	0.9142
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.007G092500 [exp]	17.46	0.8748	ANN1.2

Compare expression of checked genes

Potri.009G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.