Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59730 551 / 0 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G39380 536 / 0 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G55150 525 / 4e-180 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09520 519 / 6e-178 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT2G28640 498 / 4e-170 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 485 / 8e-165 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G09530 456 / 3e-153 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28650 438 / 5e-147 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT3G14090 328 / 4e-104 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 324 / 2e-102 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 928 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 587 / 0 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.010G212400 [exp] 584 / 0 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 563 / 0 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G166400 [exp] 330 / 2e-104 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 330 / 2e-104 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 315 / 1e-98 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 306 / 5e-95 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 302 / 7e-94 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005436 [exp] 659 / 0 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 651 / 0 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 647 / 0 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 630 / 0 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 545 / 0 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10025291 [exp] 539 / 0 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040329 [exp] 502 / 3e-171 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 442 / 1e-148 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 412 / 3e-136 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 398 / 1e-130 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.009G026900.1 pacid=42771666 polypeptide=Potri.009G026900.1.p locus=Potri.009G026900 ID=Potri.009G026900.1.v4.1 annot-version=v4.1 ATGCCTAGAAAAGGTATGAGGACTATATTGTTCAAACCATCACCTTCTAGATCACCTACTCGATCTACACCTCATCGCCACACATTCTCAGATACATTAA TGGATGACAATGTCGAGAATGCACGAGAACTCATTTCTAAGTGGGATGCCTCCCGTTCCTCCAGCCTCCACTGTGTCGACGACGCCAATCTCTTCGCATC AGATAATCGCTACGAAGCCCAACAGTACCTGAACTCGATCAAAGACCTCCAGACTGCCATGCAATATTACATCTCCCAAGACCCCACCTCGGACAAGCTG GTTCTCGCTCAAAATCTCATGCAAATTGCCATGAAGAGACTCGAGAAGGAGTTTTACATCATTTTGAAGTCCAGGAGGCAGCATCTCGATCCTGAATCCG TGTCCAGAACGTCAAGATCAAGCGTTTCTGAATTTGAGGATGAGTCTGAGGATGACGAATTGTCAAGAGTCGGAGAAGATTCCATATCTGAAGTAGAGCT CGTTTCCATGGATGCCATGAAAGATTTGAAGGCGATTGCTGAATGCATGATTGGTGCTGGTTATGGAAAAGAATGTGTCAAGATATTCAAGATCATTCGT AAATCAGTTGTTGATGAGGCCTTGTATCATCTGAACGTTGAAAGCAGGTTGAGCCTGGCACAGATTCAAAAGATGGACTGGGAGGTTCTGGAAGTTAAAA TCAAGGCCTGGTTAAATGCAGTCAAGGTCGCAGTTAAAACTCTATTTTATGGTGAAAGAGTTCTCTCTGACCATGTTTTTTCTTCTTCTCCTTCGTTGAA AGAGTCCTGCTTTGCCGATATAACAAGAGAAGGTGCCTTGTCTCTCTTTGTATTCCCTGAAAACGTAGCCAAGTGCAAGAAAGCTCCTGAGAGAATTTTC CGCACCCTTGACCTCTACGAAGCAATCGCCGATCTCTGGGCTGAAATCGAACCCATCTTTGATTTAGAATCAACCTCAACCATCAGACAACAGGTCATTA ACTCACTAAACAAGCTCGGGGAGGCAGTCTGCGCAATTCTAACAGAATTCGAGACTGCAATCTCAAAATTCAACTCAAAAGCAGCAGTGCCTGGTGGTGG CATTCATCCTCTAACACGTTACGTAATGAACTACATCACTTTCCTCACTGACTACAGTGGCGTACTTACCGACATCCTTGCTGATTGGCCTCTAACAGTA CCATCACCTTTACCAGAAGCATACTTCGGTAGCCCCGTGTCCGCTGATGGCACGAGTACCTCATCTATATCAATAAGATTAGCATGGCTGATTCTTGTTA TGCTATGCAAACTCGACGGCAAAGCTGAGATGTACAAAGATGTGGCACTCTCGTATCTATTCCTCGCAAACAATCTTCAATATGTGGTAAACAAAGTCCA GAAATCCAACCTAAAGTTACTCCTTGGTGATGAATGGATGGAGAAGCACGAGGAAAAGGTACGGCAATATGCGTCCAATTATGAACGCATGGGATGGAGC AAAGTTTTTGCTGCTCTACCGGATGCTAATGATAATCAGATGACAGCCCCTCAAGTCACTGAGTGTTTTAAGAGATTTAATTCTTCTTTCGAAGAGGCTT ATAACAACCAAGCTTCATGGGTTGTTTCCGATTCCAAACTGAGAGACCAGATAAAAGTTTCGGTTGCCAGAAAGCTTGTACCGGTATACCGGGAATTTTA TGGCAAGTATCGGCAATTGGTGGCGAGGAAGGAAGGGATTGTCAGATTTGCACCTGATGATTTGGAGAATTACCTGTCAGATTTGCTTTTCGGGACTGGA GGTTCAGGGAGCAACCTGTCATTATCAACATCTTCTTCTGTCTCGTCATTTTCCTCGTCTTCGGGTCACTCTCGGGGCGGTCGAAGTCGTTGA
AA sequence Show only first row Show all	>Potri.009G026900.1 pacid=42771666 polypeptide=Potri.009G026900.1.p locus=Potri.009G026900 ID=Potri.009G026900.1.v4.1 annot-version=v4.1 MPRKGMRTILFKPSPSRSPTRSTPHRHTFSDTLMDDNVENARELISKWDASRSSSLHCVDDANLFASDNRYEAQQYLNSIKDLQTAMQYYISQDPTSDKL VLAQNLMQIAMKRLEKEFYIILKSRRQHLDPESVSRTSRSSVSEFEDESEDDELSRVGEDSISEVELVSMDAMKDLKAIAECMIGAGYGKECVKIFKIIR KSVVDEALYHLNVESRLSLAQIQKMDWEVLEVKIKAWLNAVKVAVKTLFYGERVLSDHVFSSSPSLKESCFADITREGALSLFVFPENVAKCKKAPERIF RTLDLYEAIADLWAEIEPIFDLESTSTIRQQVINSLNKLGEAVCAILTEFETAISKFNSKAAVPGGGIHPLTRYVMNYITFLTDYSGVLTDILADWPLTV PSPLPEAYFGSPVSADGTSTSSISIRLAWLILVMLCKLDGKAEMYKDVALSYLFLANNLQYVVNKVQKSNLKLLLGDEWMEKHEEKVRQYASNYERMGWS KVFAALPDANDNQMTAPQVTECFKRFNSSFEEAYNNQASWVVSDSKLRDQIKVSVARKLVPVYREFYGKYRQLVARKEGIVRFAPDDLENYLSDLLFGTG GSGSNLSLSTSSSVSSFSSSSGHSRGGRSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Potri.009G026900 [exp]	0	1
AT4G22030			F-box family protein with a do...		Potri.004G009000 [exp]	4.12	0.9241
AT4G04480			unknown protein		Potri.004G009100 [exp]	8.77	0.9026
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	13.30	0.9118
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	13.92	0.9125
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.001G263200 [exp]	17.32	0.8901
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	21.21	0.9032	PTR2.1
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	22.27	0.9109
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	22.49	0.8918
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	24.16	0.8977
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001500 [exp]	24.73	0.8408	CYP728D4

Compare expression of checked genes

Potri.009G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.