Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 199 / 2e-66 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 194 / 2e-64 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G050200 [exp] 225 / 6e-77 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 225 / 8e-77 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 221 / 2e-75 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 220 / 1e-74 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003290 [exp] 214 / 1e-72 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 214 / 1e-72 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005441 [exp] 215 / 2e-72 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 213 / 8e-72 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 212 / 1e-71 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 212 / 3e-71 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 210 / 8e-71 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 210 / 4e-65 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 95 / 2e-25 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 94 / 6e-25 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [poplar] [flax] Ribosomal_L23 Ribosomal protein L23 PF03939 [poplar] [flax] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G027000.4 pacid=42772133 polypeptide=Potri.009G027000.4.p locus=Potri.009G027000 ID=Potri.009G027000.4.v4.1 annot-version=v4.1 ATGGCACCAGCCAAAGACAGTTTGAAAAAGGCTGACGCAAAGGCACAGGCTGTGAAGGCTGCAAGAGCAGTAAAGTCAGGTCCAACCTTCAAGAAGACCA AGAAGATCAGAACTAAAGTTACATTTCATCGACCTAGGACATTGAAGAAGGAGAGGAATCCTAAGTATCCTCGCATTAGTGCTACACCAAGGAACAAGCT TGATCATTATCAGATTTTGAAATATCCTCTCACAACTGAGTCTGCAATGAAAAAGATTGAAGACAACAACACCCTGGTATTTATAGTTGATTTGCGTGCT GACAAGAAAAAAATCAAGGATGCTGTCAAGAAGATGTATGACATTCAGACTAAGAAAGTGAATACCCTGATCAGGCCCGATGGTACCAAGAAGGCATATG TTAGGTTGACACCAGACTATGATGCCTTGGATGTGGCAAACAAGATTGGAATCATTTAA
AA sequence Show only first row Show all	>Potri.009G027000.4 pacid=42772133 polypeptide=Potri.009G027000.4.p locus=Potri.009G027000 ID=Potri.009G027000.4.v4.1 annot-version=v4.1 MAPAKDSLKKADAKAQAVKAARAVKSGPTFKKTKKIRTKVTFHRPRTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRA DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.009G027000 [exp]	0	1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	3.74	0.8279
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	4.00	0.8217
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	5.00	0.8020
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Potri.002G261900 [exp]	9.48	0.7650
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.005G040700 [exp]	10.19	0.8074
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	10.24	0.8105
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	10.90	0.7891
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063400 [exp]	15.19	0.7577
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	15.49	0.7549	Pt-RPL3.3
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Potri.010G234800 [exp]	15.87	0.7057

Compare expression of checked genes

Potri.009G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.