Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28690 155 / 4e-46 Protein of unknown function (DUF1635) (.1) AT5G59760 77 / 2e-16 Protein of unknown function (DUF1635) (.1) AT5G22930 55 / 1e-08 Protein of unknown function (DUF1635) (.1) AT3G44940 52 / 1e-07 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235200 [exp] 447 / 2e-159 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 386 / 2e-135 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.018G024900 [exp] 275 / 3e-92 AT2G28690 121 / 4e-33 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 178 / 6e-54 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.009G006000 [exp] 62 / 4e-11 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 56 / 7e-09 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 53 / 5e-08 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 52 / 1e-07 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005884 [exp] 136 / 3e-38 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 124 / 8e-34 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1) Lus10016148 [exp] 46 / 7e-06 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1) Lus10021419 [exp] 45 / 2e-05 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [poplar] [flax] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Potri.009G027100.1 pacid=42771004 polypeptide=Potri.009G027100.1.p locus=Potri.009G027100 ID=Potri.009G027100.1.v4.1 annot-version=v4.1 ATGGAGGACTTGGGTTCTATGTGGGATTATGAAGAGAGCTTTGATGAATTGAAGCAGAAGCTTGTGTACACCACCATTGAATTGGGGTCACTGAAAGTTG AAGCAAATGAAGAAATGAGAAAGCACAAGGAGGATGTCAATCATTTAATCAATCTCCTAAAGATTGCTTACCAAGAAAGAGATGAGGCCAAAGGTCAACT GCAAAAACTAGTTAACAAACTTATGCTCTCTAGTACTCCTGAATTACCGCCCATTCTTCCTCTAGCACAGCCTGAAAGCCCCCTTGTGATGCCTGCTAAA GCGAACTCCAGTATAACTGAATCTAACAGTCTATCTGATACATATAATCACCAATCACATGGCTCCTCCCCTGTGGATTCCTTACTCGATGCAGTTACTT CACCAGATTTCTCAAGCATTAACATGGCAGACTCATGTCACATGGGCTTTGTGGACAAGACCTTGGTTCAGGATTATAATGGCTCTATACCAACAGGTTT AGTGGCTCCAGCAATGGCCAAGATTGATCCGGCCGATGATGTAATTGATAAATTTGTCAAAGGAAGAGTCCTACCTCAAAAGGGAAAACTGTTGCAGGCT GTCATGGATACAGGTCCTCTTCTTCAAACACTTCTTCTTGCAGGTCCGCTTCCGCGGTGGAGAAATCCACCTCCACTGCAGCCGTTCAATATTCCACCTG TTTCTATTAGTTGTGAAACTCCAAACCTCACTGCCAATTCAAGCTGTCTAGCTCAACAACCATTGGCTTCACCATCATATATTGAAATGTCTCGAGGATC TTCTCAGATGTGTTCAGCTTCCATGTTAGGTTTTGCTCCTGGTGCTGGTTCAGGTATAGGCAATGGACGTTTGTTAAATTCCGGTGCTATCCATCAAATC CCAGCTGGAAAGCGGCAAAGATCTCAATGA
AA sequence Show only first row Show all	>Potri.009G027100.1 pacid=42771004 polypeptide=Potri.009G027100.1.p locus=Potri.009G027100 ID=Potri.009G027100.1.v4.1 annot-version=v4.1 MEDLGSMWDYEESFDELKQKLVYTTIELGSLKVEANEEMRKHKEDVNHLINLLKIAYQERDEAKGQLQKLVNKLMLSSTPELPPILPLAQPESPLVMPAK ANSSITESNSLSDTYNHQSHGSSPVDSLLDAVTSPDFSSINMADSCHMGFVDKTLVQDYNGSIPTGLVAPAMAKIDPADDVIDKFVKGRVLPQKGKLLQA VMDTGPLLQTLLLAGPLPRWRNPPPLQPFNIPPVSISCETPNLTANSSCLAQQPLASPSYIEMSRGSSQMCSASMLGFAPGAGSGIGNGRLLNSGAIHQI PAGKRQRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28690			Protein of unknown function (D...		Potri.009G027100 [exp]	0	1
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	3.16	0.9658
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	6.48	0.9490
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073091 [exp]	7.21	0.9382
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014600 [exp]	10.48	0.9461
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	11.48	0.9404	BFRUCT1.1
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	12.44	0.9505
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	12.96	0.9410
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	13.03	0.9585	Pt-PGIP.4
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	14.14	0.9346	Pt-GRX.2
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.016G124700 [exp]	15.49	0.9330	Pt-SOF.3

Compare expression of checked genes

Potri.009G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.