Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 408 / 9e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 402 / 9e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 394 / 7e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 373 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20770 370 / 3e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 358 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 348 / 8e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 350 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 350 / 1e-107 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 349 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 434 / 2e-138 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 422 / 2e-133 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 410 / 2e-128 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 397 / 6e-124 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 385 / 6e-121 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 373 / 4e-116 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 369 / 1e-113 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 363 / 4e-113 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 362 / 2e-111 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010169 [exp] 796 / 0 AT3G09040 357 / 4e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 426 / 1e-135 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 420 / 2e-133 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 391 / 2e-121 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 384 / 4e-119 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 382 / 5e-119 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10032091 [exp] 361 / 1e-112 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 360 / 1e-112 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 360 / 2e-111 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017032 [exp] 350 / 9e-109 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G027400.1 pacid=42770780 polypeptide=Potri.009G027400.1.p locus=Potri.009G027400 ID=Potri.009G027400.1.v4.1 annot-version=v4.1 ATGAAAAGCATTCGACTAACTTCAAAGCTGAAAACTTTCTTTCAGTTTTCGAAGAAAGTTTACAAATTTAACAACATACAATTGAAGAATCTGCACCAAC TGTACAGTCCCATTTCAACTAAGTCTTCATGCTCTGGTTTCTTTATAGGAAAGGACTCAGTTGCTCTTTCTAAGGCATTATCTTTTTGTGAGAATTCAAA ATCATTCATCCTTGGAACCCAAATTCATGGTTATATTATTAAGCTTGGATTTAGTAGTGATGTTTTTGTTTCGAATAATTTGATCAAGTTTTATGCAAAA GGTGCGGTTTTGAGGTATGGGTTTAATGTGTTTGATGGAATGCTTGAGAGAAATGTTGTTTCTTGGACTTTGATGGTTTGTGGAGCTATTCAATGTGAGG AAGTTGAACTGGGGTTGGAGGTGTTTTTGGAGATGATAAGAGATGGATTTGTGCCTAATGAGTTTGGACTTGGTAGCGTTATGAAGGCGTGTGGGAATAG TGTGGAAGGTAGGGTATTCGGTTTGTGTGTTCATTGTTTTGCTTTGAAAATTGGAATGGAGAGAAACCCTTTTGTGAGTTGTTCAGTTTTGAGCTTTTAT GCTAAGTTGGGGGATATTGGAGCAGCAGAGAGGGTGTTTGAGAGTTTGGAAGAGGTTGATGTTGGTTGTTGGAATGCTATGATTGGAGGGTATGCACAAT GCGGGTATGGTTTTGAAGCCATCGTTACTGCATCTTTAATGCGAAGGAAAGGAATATTTATGGACAAATATACCTTCATAAACGTTATTCAGGGCTGCTC ACTTCTTGGTGACTTAAATTTTGGAAGGCAGATTCATGGATTGATCATTAGAAGTGAGCTGGAACTCAGTGCTCCGGTAATGAATGCTCTTATGGATATG TACTTTAAGAATGGTGGGATGAAATCCGGTTTGGTGGTCTTTAAAAAGATGCATGATAGAGATGTTGTAACATGGAATACTGTATTTGGAAGCTTCTCCC AGCATGAAGATCCTAAAGACATTGCAAGCTTGTTCCATAGTTTTCTGCTAACCAGCATGAGGCCTAACCACATTACCTTCTCAATTTTATTTAGAGAATG TGGGAAGCTGCTGAATCTTGATCTTGGGCTTCAGTTTTGTTGCCTTGCATTGCATTTTGGATTATTTGATGAAGCTAACATCACATCCGCACTGATCAAT ATGTTTTCCAGGTGTGGAAAAATGGAAATGGCACACTTAGTATTTAAAAGCAAAGTATCTGAAAACATAATTATTTGGAATGAGTTAATTTCAGGGTATA AATTGAATTGTTGTGATGCGGAAGCCTTGAAGACCTTCTATGACTTGTTGCAGTTGGGGGTTGAAGCGAATGAGTATACCTTTTCAAATGTCTTGGAAAC TTGCTCCAGATCTGAGAATCAACTAATGAACAGACAAATTCATGGAGTTGCGTTTAAGTCTGGCTTTGCTTCTCATGGATATGTTTGTAGCTCATTAATC AAAGGTTACATTAAATGTGGGCTCTTGGATGATTCTCTTAAGGTTTTCAATATGCTTGATAGACCAGACATGGCAGCTTGGGGGACCATGATATCTGCAT TCGTGCATCAAGGCTGGGATTGTGAAGCTATTAGATCACTCAACTTGCTGATAGAAGCTGGTGAGAAACCTGATGAATTTATTTTGGGCAGCATTTTAAG TAGCTGTGCGAGTACTGTGGCCTATTGTCAAACCAAATCTGTTCACTCCCTGATTATCAAATTGGGGTTTGAAGGACATGTATTTGTTGCTAGTGCAGTT CTAGATGCATATGCAAAGTGCGGGGACATCCAAAGTGCAAAGATGGCTTTCAACCAGTCATGCAAATCCAGTGACGTTGTTATATATAATGCCATGATCA TTGCTTATGCCCATCATGGTCGTGTTGTGGAAGCTTTGGACACGTATGATAAAATGAAGTTGGCTAATCTACAGCCCAGCCAAGCCACATTTGTGTCAGT TATAGCAGCCTGCGGACATATAGGCCATGTTGAAAAAGGATGTCGTTTGTTTAAATCAATGGATTTGTATGGAATGGAGCCATCTCCTGATATTTATGGT TGCTTAGTTGATATGTTCTCTCGAAATGGATACCTTGAAGATGCTAAGCAAATAATTGAATCCTTGCCGTACCCTGCTTGGCCTGCTATTTTGAGATCCT TGCTCAGTGGTTGTAGAATGTACGGGAACAGAGAATTGGGAGAATGGGCTGCCAAGAAGTTACTCCAGTTAGTCCCTCATAATGATGCTGCACATGCATT GTTGTTCAAGGTTTATTCTGAGTTGGGTAATTGGGAAGATGCAGCGAAGATGAGGAGGGAAATGGCAGAAAGAGGCCTTCGAAAAGATCCCGGACATAGT TGGATTGAAGCATGGTAA
AA sequence Show only first row Show all	>Potri.009G027400.1 pacid=42770780 polypeptide=Potri.009G027400.1.p locus=Potri.009G027400 ID=Potri.009G027400.1.v4.1 annot-version=v4.1 MKSIRLTSKLKTFFQFSKKVYKFNNIQLKNLHQLYSPISTKSSCSGFFIGKDSVALSKALSFCENSKSFILGTQIHGYIIKLGFSSDVFVSNNLIKFYAK GAVLRYGFNVFDGMLERNVVSWTLMVCGAIQCEEVELGLEVFLEMIRDGFVPNEFGLGSVMKACGNSVEGRVFGLCVHCFALKIGMERNPFVSCSVLSFY AKLGDIGAAERVFESLEEVDVGCWNAMIGGYAQCGYGFEAIVTASLMRRKGIFMDKYTFINVIQGCSLLGDLNFGRQIHGLIIRSELELSAPVMNALMDM YFKNGGMKSGLVVFKKMHDRDVVTWNTVFGSFSQHEDPKDIASLFHSFLLTSMRPNHITFSILFRECGKLLNLDLGLQFCCLALHFGLFDEANITSALIN MFSRCGKMEMAHLVFKSKVSENIIIWNELISGYKLNCCDAEALKTFYDLLQLGVEANEYTFSNVLETCSRSENQLMNRQIHGVAFKSGFASHGYVCSSLI KGYIKCGLLDDSLKVFNMLDRPDMAAWGTMISAFVHQGWDCEAIRSLNLLIEAGEKPDEFILGSILSSCASTVAYCQTKSVHSLIIKLGFEGHVFVASAV LDAYAKCGDIQSAKMAFNQSCKSSDVVIYNAMIIAYAHHGRVVEALDTYDKMKLANLQPSQATFVSVIAACGHIGHVEKGCRLFKSMDLYGMEPSPDIYG CLVDMFSRNGYLEDAKQIIESLPYPAWPAILRSLLSGCRMYGNRELGEWAAKKLLQLVPHNDAAHALLFKVYSELGNWEDAAKMRREMAERGLRKDPGHS WIEAW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	6.78	0.8660
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	8.36	0.8315
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	8.83	0.8111
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	8.94	0.8335
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	10.39	0.8129
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	12.72	0.8329
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	15.49	0.8147
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	15.62	0.8323
AT1G69290			Pentatricopeptide repeat (PPR)...		Potri.008G095800 [exp]	16.97	0.7894
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	17.20	0.7229

Compare expression of checked genes

Potri.009G027400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.