Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MBD906
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59800 96 / 4e-23 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) AT5G59380 70 / 3e-14 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 58 / 2e-10 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240100 [exp] 73 / 1e-15 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 70 / 3e-14 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005888 [exp] 99 / 7e-24 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10040859 [exp] 91 / 2e-22 AT5G59800 66 / 3e-13 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10004963 [exp] 71 / 6e-14 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005460 [exp] 67 / 9e-14 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G027600.8 pacid=42770808 polypeptide=Potri.009G027600.8.p locus=Potri.009G027600 ID=Potri.009G027600.8.v4.1 annot-version=v4.1 ATGGACGCGAAAATCTCATCCCAAAATCAAAACAACGAATTACAGGTATCAACCACCATTTACCACCAATTCAAACTCCCAAATGATTGGGTCGTCGTGC GACGCTGCCGCAGCAAACGCGGCAACCGCCGTAGCCATAACGACAAGTGTAACTTTCATCTTAATATGCAGTATCACTATGAGCCTGGGACTGGACAGCG ATTTTGCTCGCTGATATCTATTCAGAAACACCTGAGTGGAGAAACATCCAAGAGTGCTAAACCTGGCAATAAAAAAAAAATACAAATTGATCCATACATT TTCAAAAGCCGCTCATTATTCGATCTGCCTAATGGTTGGATTGTTGAGAAAAAGCCACGCAAGAACATGGAATGTGCAGGTATTATTGACAAGCACTACT TTGAGCCGGAAACTGGGAAGCGGTTCCGTTCCCTGAGGTCTGTTGAGAAATACCTTACTGAAGGTAAAGAGCACATAGCTACACTGGAAGCACTAAAAGC AGGAGATAATTTTATTCCTTCCAAAAGCTCCAGTTCTCAGAAGGAACATGTTTCTAGGAAGAAGGTTGAAACTTCAATGCTAGATCCCTCCAGCATTCCA GCCAAAATAAAATGGGTCCTCAGTGGTCCTGGTGGAATTGTATGGAATCCTTTCATGGACGATTCTCTGGTCCCGGAATTCATAAAGCAAAAGTGGTCCG AGACATTTGTGTTCTCCATCATTGACAGACTTTAA
AA sequence Show only first row Show all	>Potri.009G027600.8 pacid=42770808 polypeptide=Potri.009G027600.8.p locus=Potri.009G027600 ID=Potri.009G027600.8.v4.1 annot-version=v4.1 MDAKISSQNQNNELQVSTTIYHQFKLPNDWVVVRRCRSKRGNRRSHNDKCNFHLNMQYHYEPGTGQRFCSLISIQKHLSGETSKSAKPGNKKKIQIDPYI FKSRSLFDLPNGWIVEKKPRKNMECAGIIDKHYFEPETGKRFRSLRSVEKYLTEGKEHIATLEALKAGDNFIPSKSSSSQKEHVSRKKVETSMLDPSSIP AKIKWVLSGPGGIVWNPFMDDSLVPEFIKQKWSETFVFSIIDRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Potri.009G027600 [exp]	0	1	MBD906
AT3G62000			S-adenosyl-L-methionine-depend...		Potri.002G183600 [exp]	9.32	0.6362
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.010G090900 [exp]	11.83	0.5840
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	24.73	0.5601
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.005G158100 [exp]	30.98	0.5209
AT1G31910			GHMP kinase family protein (.1...		Potri.003G098100 [exp]	45.49	0.5064
AT4G37280			MRG family protein (.1)		Potri.007G049300 [exp]	66.24	0.5056
AT3G07510			unknown protein		Potri.014G176000 [exp]	165.22	0.4518
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G009800 [exp]	238.99	0.4009

Compare expression of checked genes

Potri.009G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.