Plant FIBer expression Database

Potri.009G028600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28780 762 / 0 unknown protein
AT3G09450 448 / 5e-146 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G237300
[exp]
1296 / 0 AT2G28780 785 / 0.0 unknown protein
Potri.006G082000
[exp]
588 / 0 AT2G28780 555 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005903
[exp]
818 / 0 AT2G28780 720 / 0.0 unknown protein
Lus10040846
[exp]
771 / 0 AT2G28780 680 / 0.0 unknown protein
Lus10024409
[exp]
590 / 0 AT2G28780 528 / 1e-176 unknown protein
Lus10025334
[exp]
502 / 3e-167 AT3G09450 466 / 4e-154 unknown protein
Lus10007010
[exp]
51 / 4e-07 AT2G28780 55 / 3e-09 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0307 FUSC PF13515 FUSC_2 Fusaric acid resistance protein-like
Representative CDS sequence
>Potri.009G028600.1 pacid=42770964 polypeptide=Potri.009G028600.1.p locus=Potri.009G028600 ID=Potri.009G028600.1.v4.1 annot-version=v4.1
ATGTCAGCCGCAACAGACCGAGCTCGAGCTGTGTGGCTCCGATGCCTAGCCTCGGCGTTCAGGACTGCCCTGGCATGTACTATAGTGGGTTGCACCACCC
TCTATGGTCCAGCTTCTATCCGACACCATATAGCCTTCCCTGCATTCTCTTATGTGACTGTAATACTCATAGTCACTGATGCAACCTTAGGTGACGCTCT
TCATGGTTGCTGGCTAGCACTCTATGCCACGGTCCAGAGCGTGGGGCCGGCTCTGCTGAGCCTTTGGCTGATTGGTCCAGCTATGCTTACTAGTGGCACC
ATATCTTTAGCAGTGGCTCTGGGTGCATTCGTGGTGGTTTTTCCTGAGGGGACTCATTTAGTTGCAAAGCGAATTGCATTGGGTCAGATTGTTATCGTGT
ACGTTATAGCTTTTATCAATGGTGTGCATACCGAGGCTATTATGCATACTTTGCATGTAGCCGCTAGTACTGCTATTGGAGTCTTAGCTTGTGTTCTTGC
CTTGCTGTTACCGTATCCAAGACTGGCTTGTTGGGAGCTGAAACTGAATTGTGAAAGGCTAGCTGAAAATGTTTCTGCGAGGCTGAACCTCTATGTAAAA
GCTTTCTGTGCGGAAGACAGCGCTTTGGCGTTGACATCTATCTCTCAAGCCAAGCCATTGGCTGTTGCTGGAGCCAAACTTCTTCAGAGTATTAAACGCT
ACCAAGAAAGCGTCAAATGGGAGAGACTTCCATTGAGATTTTTGAGAAACTTGTACTTGAATCCGGGAGAGAGATTGCAAGAGCTCGAGATACCATTAAG
AGGGATGGAAATGGCTTTAACCAGCTGTACCACCTCATTACCTGTAAGAATTCTCGATGGAGAGACCAAACATGGTCTAGTTCAACTAGTGGAGAATGTT
AGCCTTATCCAAAAACAGATCAAGAATTGTTTGCCTAGAGATTCTTTAACTGTTCCAGAATCAAATGCTGATAATATTGTCGAGTCCCACCAAACACCTC
AGACAATCTCAACAAGGCACCAAGATTTGCCTTCTTTTTTCTTCTTATTTTGCATGAAACTCCTCCACTGCAAATCACTGGGGAAACCAATTACCCCCAC
GCAACAAAAAGGATCGAGCACTCCATCTAAGCAAACTGGGTTCTTCAAGAGCACGTGGATGAGCAACTGGTCTACAAGTGTAAGCAGCAAAAGGCTTATG
CCAGCATTCAAATGCTCTCTCTCCTTGGGTCTCGCTGTCCTGTTTGGTTTGATATATAGCAAGAAAGATGGTTATTGGTCAGGCCTCCCTGTAGCGATTA
GCTTAGCTGCTGCAAGGGAGGCAACATTCAAAGTTGCTAATGTTAAAGCACAGGGGACAGTATTAGGGACTGTATATGGAGTATTTGGCTGCTTTGTGTT
CGAAAGGTACTTGTCAATAAGGTTCATCTCTCTCCTTCCTTGGTTCGTTATTACCAGTTTTCTGAGGCATAGCAAGACGTATGGCCAAGCAGGTGGAATT
TCTGCGGTGATTGGAGCTGTGCTAGTACTGGGCAGGAAAAATTTTGGCCCACCAAGCGAATTTGCTATAGCAAGAATTGTGGAAACCTTTATTGGATTAT
CTTGCTCAATCATGGTAGACCTTCTCTTGCAACCCACCAGAGCTTCTTCTCTAGCCAAAGCACAACTTTCTAAATGTTTCGAGACATTGTCTGCTTGCAT
TGGCTCAATAAGCCTAGCAGCCAACAACAAAACCAGCTTGCTAGAGAACCAGAGGAGACTAAAATTGGATGTTAGTGAACTAGGGAAGTTCATTGGAGAA
GCTGAGGTGGAGCCCAACTTCTGGTTTTTGCCTTTTCCTAGTCCTTGCTATTTTAAGCTCTTGGGGTCTTTGTCAAGGCTGGTGGATCTCTTGCTTTTTA
GTGCTGATGCAGTGGGACTCCTTGAACATGAATCACAAAAATTTGGAGCTTCGTGGAAGGAGTACGTAACTAAGCTAGATGGTGACCTTGAAATTTTCAA
GGAAATGTCTGGTTCCTTGGTTAAATGTTTTGAGGATGTCACGATGTTGTTATCCTTAGAATTTCTTGAAAAGGAACTTGAAAACAAAAACATCTCTCAT
GATCTTGAAATGGGAAAATCTTCAAACAGGAACATTTTTAAAGTTTCCGGTTCAAATGAAGACAAGATAGATAGCGTCACCAGTTCTTATCTCCAACATT
CAAAGGAAATGGTAGACAAGTTTCACGCAGCTGATGAAGGGGAAAGAGAACTGAAGAGCCAGGTGGTCTTGTGCTTCAGTGCTCTAGGTTTTTGCATGAG
CAATTTAATAAAAGAGACCAAAGAGATTGAGAAGGGAATCATTGAAATTCTTCAATGGGAAAACCCTTCAAAACACATAAATTTGTACGAAATCTCATGT
AAAATCCGTGCTCTATACAATTGA
AA sequence
>Potri.009G028600.1 pacid=42770964 polypeptide=Potri.009G028600.1.p locus=Potri.009G028600 ID=Potri.009G028600.1.v4.1 annot-version=v4.1
MSAATDRARAVWLRCLASAFRTALACTIVGCTTLYGPASIRHHIAFPAFSYVTVILIVTDATLGDALHGCWLALYATVQSVGPALLSLWLIGPAMLTSGT
ISLAVALGAFVVVFPEGTHLVAKRIALGQIVIVYVIAFINGVHTEAIMHTLHVAASTAIGVLACVLALLLPYPRLACWELKLNCERLAENVSARLNLYVK
AFCAEDSALALTSISQAKPLAVAGAKLLQSIKRYQESVKWERLPLRFLRNLYLNPGERLQELEIPLRGMEMALTSCTTSLPVRILDGETKHGLVQLVENV
SLIQKQIKNCLPRDSLTVPESNADNIVESHQTPQTISTRHQDLPSFFFLFCMKLLHCKSLGKPITPTQQKGSSTPSKQTGFFKSTWMSNWSTSVSSKRLM
PAFKCSLSLGLAVLFGLIYSKKDGYWSGLPVAISLAAAREATFKVANVKAQGTVLGTVYGVFGCFVFERYLSIRFISLLPWFVITSFLRHSKTYGQAGGI
SAVIGAVLVLGRKNFGPPSEFAIARIVETFIGLSCSIMVDLLLQPTRASSLAKAQLSKCFETLSACIGSISLAANNKTSLLENQRRLKLDVSELGKFIGE
AEVEPNFWFLPFPSPCYFKLLGSLSRLVDLLLFSADAVGLLEHESQKFGASWKEYVTKLDGDLEIFKEMSGSLVKCFEDVTMLLSLEFLEKELENKNISH
DLEMGKSSNRNIFKVSGSNEDKIDSVTSSYLQHSKEMVDKFHAADEGERELKSQVVLCFSALGFCMSNLIKETKEIEKGIIEILQWENPSKHINLYEISC
KIRALYN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28780 unknown protein Potri.009G028600
[exp]
0 1
AT5G47990 THAD1, THAD, CY... THALIAN-DIOL DESATURASE, "cyto... Potri.001G270900
[exp]
1.41 0.9495
AT5G19890 Peroxidase superfamily protein... Potri.003G214500
[exp]
4.35 0.9495 PRX1.10
AT2G39380 ATEXO70H2 exocyst subunit exo70 family p... Potri.008G048700
[exp]
7.34 0.9453
AT1G64160 Disease resistance-responsive ... Potri.001G096560
[exp]
9.21 0.9347
AT1G64160 Disease resistance-responsive ... Potri.013G142401
[exp]
13.26 0.9290
AT1G54120 unknown protein Potri.001G167600
[exp]
14.96 0.9124
AT1G52790 2-oxoglutarate (2OG) and Fe(II... Potri.001G176000
[exp]
15.49 0.9339 2OGox10
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Potri.005G030100
[exp]
17.54 0.9306 CYP76G5
AT1G63440 HMA5 heavy metal atpase 5 (.1) Potri.003G125600
[exp]
20.12 0.9263 Pt-HMA5.3
AT4G17340 TIP2;2, DELTA-T... tonoplast intrinsic protein 2;... Potri.001G157000
[exp]
26.83 0.9195 TIP2.6

Potri.009G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.