Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) AT4G36640 45 / 6e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237400 [exp] 732 / 0 AT3G46450 446 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.007G025900 [exp] 52 / 2e-07 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 47 / 1e-05 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 44 / 0.0002 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005452 [exp] 480 / 3e-167 AT3G46450 417 / 2e-142 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10040845 [exp] 478 / 2e-166 AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004953 [exp] 394 / 7e-134 AT3G46450 358 / 4e-120 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10016575 [exp] 265 / 2e-83 AT3G46450 242 / 1e-74 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004952 [exp] 60 / 3e-11 AT3G46450 46 / 1e-07 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10041779 [exp] 44 / 0.0003 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 43 / 0.0004 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.009G028700.3 pacid=42772613 polypeptide=Potri.009G028700.3.p locus=Potri.009G028700 ID=Potri.009G028700.3.v4.1 annot-version=v4.1 ATGGGAGACCCACTGCATAATTTTGGTAAAAATCAAGGGCAAGGGCAGACTGCTGTTTATAAGAGAAACATAATTGCTTCTAGTCTTAAAGCATGTCCTC TGAGTGCTTACAAGCATATAGTTTCTTCAAGACATGTTACTGGCCCAGTTGGTCAGGTAGCAATATTTTTACTCAAAGTTGCTGCGTTAGAGACAGTGCG AAGGGTTTCGAGGTGTAAATGTCCCCATGTGTGGAATGGTCTTCAGGCTTTGCAACTTCTTTGCTATCCACCGTTTAAGTGGATTCAAAGATGGGCTCCC TTCAAGGGCTTGGTTAAAGGCGTACAGATGTTTTCAAGGCCGTTATTAGTCCTTTCAGTTGCAACAGCTATATCTGATCAATCAAACCGCAGTGGTGAAA ACTCAAATGGCACTAATAATTCTCATGCTGATTCAGAAACATGTTCTGAGTCGCTCTCTGCACGTTCTTCTTTTGAAACTAGGACTTCTAGTGGGGCCTT TCAAAGTCTAGCATCTGAAAATTGGTTGATACAACTGCTTACGGAACTAGAAAATCAAGGAATCACATTACCAGAAAGAATTAATGAGGACGAGCTCCGT AGATTTTATACTGCTGCAAATGGGGACTTTTCATGCTTTTTATTGTCAATTAAGAAGACAATCCGTTGGAGGGAGACTTATAGAATTCTTTCACAACAAG AGCTTGAAATGTGGTCAAATATGGTCTTCTGGCATGATCATGATATGCTGAACCGACCTTGCCTCATTGTGCGGCTTGGTCTAGCTTGTACCGGCTTGCC ATCTCATGAGAGACCTCGATTTGCTCAAGCAATCATATCTCAGGTAGAGCATGGAGTCCAGCATTTAGTTGATGAAGATAGTCCACAGCTTACAGTTATT GTGGATTGTGATGGCATATCTCCATTGAAAATCCCCATGCAAATAATGAGATCCTGTTCTTCACTTCTGCAAGATAACTTCCCCAACTGTCTTGGCCATT TGCTTGTTATACGGCTTCCTCCAGTAGTTCGAGTAATTGCGCAAACCTTTATTCAAGTTCTGAAACCTGTCACGAGGAAGAAGCTGAGAATTGAAGGGAA CATGAACCACAGGGTTCTCTCTAAGTACCTTAAGACAATCCCATCATGTTTAGGAGGCAATTGCACTTGTGAGATATGCTCAGACATTCACGTTAGGCAG CAGCCTCGATCTTCTATAAATGAGATCGACATGGCCAGGCCTTATTTTAGTGATGGCGAGGATCTTCCTTCACCACGACAGACTAGTCAGGCTGATGTAC ACGTGAGTGATAACTGGAACCACTTGTTGAGAACTCTTGTAATTGGCATTCTTATGGTGTGGATTGTTATAGCTCTCATTGCGGGAATATATGATCCTGA AAGCCGTCCCTTTTAG
AA sequence Show only first row Show all	>Potri.009G028700.3 pacid=42772613 polypeptide=Potri.009G028700.3.p locus=Potri.009G028700 ID=Potri.009G028700.3.v4.1 annot-version=v4.1 MGDPLHNFGKNQGQGQTAVYKRNIIASSLKACPLSAYKHIVSSRHVTGPVGQVAIFLLKVAALETVRRVSRCKCPHVWNGLQALQLLCYPPFKWIQRWAP FKGLVKGVQMFSRPLLVLSVATAISDQSNRSGENSNGTNNSHADSETCSESLSARSSFETRTSSGAFQSLASENWLIQLLTELENQGITLPERINEDELR RFYTAANGDFSCFLLSIKKTIRWRETYRILSQQELEMWSNMVFWHDHDMLNRPCLIVRLGLACTGLPSHERPRFAQAIISQVEHGVQHLVDEDSPQLTVI VDCDGISPLKIPMQIMRSCSSLLQDNFPNCLGHLLVIRLPPVVRVIAQTFIQVLKPVTRKKLRIEGNMNHRVLSKYLKTIPSCLGGNCTCEICSDIHVRQ QPRSSINEIDMARPYFSDGEDLPSPRQTSQADVHVSDNWNHLLRTLVIGILMVWIVIALIAGIYDPESRPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46450			SEC14 cytosolic factor family ...		Potri.009G028700 [exp]	0	1
AT1G02160			Cox19 family protein (CHCH mot...		Potri.014G051850 [exp]	2.00	0.6430
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	11.61	0.5923
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Potri.002G121000 [exp]	12.48	0.6576
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	14.31	0.6408
AT1G57680			unknown protein		Potri.003G003500 [exp]	22.04	0.6286
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	23.45	0.5961
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	25.09	0.6342
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.007G130900 [exp]	25.37	0.6163
AT5G51960			unknown protein		Potri.010G217300 [exp]	26.72	0.6104
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	42.93	0.5499

Compare expression of checked genes

Potri.009G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.