Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALB3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28800 545 / 0 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) AT1G24490 394 / 1e-133 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237800 [exp] 688 / 0 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.010G051900 [exp] 401 / 1e-135 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.008G182000 [exp] 396 / 2e-134 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040841 [exp] 585 / 0 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10016570 [exp] 573 / 0 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10006454 [exp] 397 / 5e-135 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10011398 [exp] 256 / 5e-80 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10001427 [exp] 51 / 1e-06 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 50 / 3e-06 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001639 [exp] 47 / 1e-05 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10032381 [exp] 42 / 0.0006 AT5G62050 270 / 4e-87 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF02096 [poplar] [flax] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Potri.009G029100.1 pacid=42770957 polypeptide=Potri.009G029100.1.p locus=Potri.009G029100 ID=Potri.009G029100.1.v4.1 annot-version=v4.1 ATGGCGAGAACTCTCCTTTCATCTCCACCGTTCATCGCCACATCTCTCCCCTCTCTCTCTCGCCACACTCTCACTACCAACCGTCGATTCATTTCCACAA GAATCAAGTTAAGCTTACACGACAACATTCCACCGATTCATCATCACTTAGACTCTTCAATTGATTTCAATTCAATTATTAGCAGAGCTGAAGGATTTCT CTACACGCTCGCTGATGCCGCCGTCGCGGTAGATTCCGCTGCTTCTACTACCTCAACTGATACTGCTCAAAAGAGTGGCGGTTGGTTCGGTTTCATCTCT GATGGTATGGAATTCGTTCTCAAGGTGCTGAAGGATGGACTATCGGCTGTACATGTGCCGTATGCATACGGTTTTGCCATTATTTTGCTTACTGTTTTTG TTAAAGTTGCTACTCTGCCTTTGACCAAGAAACAGGTAGAATCTACACTGGCTATGCAAAACCTGCAACCTAAGATAAAAGCTATTCAACAAAGGTATGC AGGAAATCAGGAAAGAATACAGCTTGAGACATCACGTCTATACAGGCAGGCTGGAGTTAATCCATTAGCAGGTTGTTTTCCAACTTTGGCTACAATACCA GTATGGATAGGCCTATATCAAGCTCTTTCAAACGTTGCAAATGAGGGAGTGTTGACAGAAGGTTTCTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAA TCGCAGCTCGACAAAGCGGATCAGGAATTTCTTGGCTTTTTCCATTTGTGGATGGTCATCCACCATTAGGCTGGAATGACACTGCAGCATACCTGGTTTT GCCTGTCCTCCTTGTTGTCTCACAGTACGTATCAATGGAGATCATGAAGCCTCCTCAGACAGATGATCCAACTCAAAAGAACACACTTCTTGTTTTCAAG TTTCTACCTCTTATGATTGGTTACTTCTCTTTGTCTGTTCCATCGGGATTATCTATATACTGGTTCACAAACAACGTCCTCAGCACAGCCCAACAGGTAT GGTTGCGCCAATTAGGCGGTGCAAAGCCTGTAGTTAATGAGAATGCAAGTGGAATCATCACTGCAGGACGTGCAAAAAGATCAGCTGCACAACCAGGGCA GCCTGGTGATAGGTTCAGGCTAAAGGAAGAAGAGAAGGGCAAAAAATTGAGCAAAGCATTGCAATCAGAAGATGTTCAAGCTCTGGATTCTGCATCTGAC GAGGATTCAGATGAAGAGACTAAGGACAAGGGCGAGGAGGTTCTGGAAGAAGCATATGCTTCTAGTGCAAGCAAGAAGGTCTCGGATATTTCTCGGCCAA AGAGAAGCAAGCGGTCAAAGAGAAAGCGGGCTGTATAA
AA sequence Show only first row Show all	>Potri.009G029100.1 pacid=42770957 polypeptide=Potri.009G029100.1.p locus=Potri.009G029100 ID=Potri.009G029100.1.v4.1 annot-version=v4.1 MARTLLSSPPFIATSLPSLSRHTLTTNRRFISTRIKLSLHDNIPPIHHHLDSSIDFNSIISRAEGFLYTLADAAVAVDSAASTTSTDTAQKSGGWFGFIS DGMEFVLKVLKDGLSAVHVPYAYGFAIILLTVFVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIP VWIGLYQALSNVANEGVLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDPTQKNTLLVFK FLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRQLGGAKPVVNENASGIITAGRAKRSAAQPGQPGDRFRLKEEEKGKKLSKALQSEDVQALDSASD EDSDEETKDKGEEVLEEAYASSASKKVSDISRPKRSKRSKRKRAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.009G029100 [exp]	0	1	ALB3.1
AT3G09310			unknown protein		Potri.016G099700 [exp]	1.00	0.9844
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	2.44	0.9798	CCD1.5
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	5.19	0.9794	ALB3.2
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	7.74	0.9740	RPOD1.1
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	8.48	0.9760
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.010G222900 [exp]	9.38	0.9535
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	9.74	0.9741
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	12.68	0.9724
AT4G37920			unknown protein		Potri.007G000400 [exp]	14.69	0.9686
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	17.88	0.9700

Compare expression of checked genes

Potri.009G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.