Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 160 / 3e-47 unknown protein AT2G39560 68 / 4e-13 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238300 [exp] 469 / 4e-168 AT5G59350 146 / 1e-41 unknown protein Potri.010G206100 [exp] 239 / 1e-77 AT5G59350 111 / 1e-28 unknown protein Potri.008G054400 [exp] 238 / 3e-77 AT5G59350 91 / 8e-21 unknown protein Potri.016G071700 [exp] 60 / 2e-10 AT3G52480 47 / 3e-06 unknown protein Potri.006G204400 [exp] 59 / 6e-10 AT3G52480 74 / 5e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016568 [exp] 202 / 2e-63 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 191 / 5e-59 AT5G59350 160 / 2e-47 unknown protein Lus10040302 [exp] 172 / 3e-52 AT5G59350 117 / 3e-31 unknown protein Lus10023421 [exp] 169 / 5e-51 AT5G59350 115 / 2e-30 unknown protein Lus10005456 [exp] 131 / 2e-37 AT5G59350 92 / 7e-23 unknown protein Lus10004955 [exp] 76 / 2e-16 AT5G59350 147 / 2e-44 unknown protein Lus10005455 [exp] 61 / 2e-11 AT5G59350 54 / 1e-09 unknown protein Lus10029407 [exp] 55 / 1e-08 AT3G52480 74 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G029300.1 pacid=42770768 polypeptide=Potri.009G029300.1.p locus=Potri.009G029300 ID=Potri.009G029300.1.v4.1 annot-version=v4.1 ATGACATCTTTCAGTGAGTTAGGTATTGGTTTAGGCCTAGTCTTCGGCTGCCTTCTTTTAGCAATTGTTGCAGAGCTTTACTACTTGCTATGGTGGAAGA AGAGAATCAGCAACAGAGAAGTTGAAGAAGATGATGGTTATAGCAGCAACTATGCTAAGGGATTCTTTCATCTTATTTGCTGGAAAAAACCCTCCTTTTT CAGAAGTAACATTACTCAAGATGTTGTGAGAGATCCAGAAGCCCCTTGCCAAGAACCAGACCAAGAATTAGGCACAAGCAAAGATTTGCTTATAAAAGCA TTTGGTGAAGAAAGTGCAGAGTCTGAGATCATGAGGCTGCACAACCTTTGTGGTCCACCTAGATTTCTCTTCACTATAAAAGAGGAAACAAAGGAGGATT TGGAGTCTGATGATGTGAAGTCCAGAGGCGATAGGAGCAGAAAGGGGTCAAGGACAAAAAGCTTGAGTGATCTTATGGTGACTATTGACACCCCATTCCT TTCTCCTTTGGCTTCTCCACGTTTAAAATCCCCTCCTGTCAATGTTTTGGATTCTTATCATCACCATGGATTCAATCCACTCTTTGAATCATCAGTGGAA GCAGAGCTTAGCCGGCTGAGATCTTCCCCGCCTCCAAGATTCAAGTTCTTGAGGGATGCAGAGGCGAAACTGTTTAGAAGGTTAATGGAAGAAGCCGAGA AAAGGGCATCTAAAAATTGTGTTTCTGTTCAAGATTCATCAGAGATTAAAGTATCTAATTCAACGATGATAACAGAAGAGACAGAAGGGTCTTTTCTAGG CTTTATTGTTGGCAAGAACAAAGAAAGTGAAATTCTACATCATCTACCACAATATCATTCAAGTTCTTCTCAGGTACTCCCATTGGCTTCTTCCCCTACG ACATTCAGACCCCTGGACAAGAAGCCCGTTATGCATTAA
AA sequence Show only first row Show all	>Potri.009G029300.1 pacid=42770768 polypeptide=Potri.009G029300.1.p locus=Potri.009G029300 ID=Potri.009G029300.1.v4.1 annot-version=v4.1 MTSFSELGIGLGLVFGCLLLAIVAELYYLLWWKKRISNREVEEDDGYSSNYAKGFFHLICWKKPSFFRSNITQDVVRDPEAPCQEPDQELGTSKDLLIKA FGEESAESEIMRLHNLCGPPRFLFTIKEETKEDLESDDVKSRGDRSRKGSRTKSLSDLMVTIDTPFLSPLASPRLKSPPVNVLDSYHHHGFNPLFESSVE AELSRLRSSPPPRFKFLRDAEAKLFRRLMEEAEKRASKNCVSVQDSSEIKVSNSTMITEETEGSFLGFIVGKNKESEILHHLPQYHSSSSQVLPLASSPT TFRPLDKKPVMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59350			unknown protein		Potri.009G029300 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Potri.003G131000 [exp]	1.73	0.7746
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Potri.016G125600 [exp]	3.46	0.7481
AT4G28290			unknown protein		Potri.013G131900 [exp]	8.00	0.7979
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	9.53	0.7582	Pt-SMO2.2
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.015G040300 [exp]	13.41	0.6735	MPK8.2
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	14.49	0.7395
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	30.00	0.7719
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	33.66	0.7509
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.010G152600 [exp]	33.74	0.7298	Pt-ARF1.6
AT4G14420			HR-like lesion-inducing protei...		Potri.005G222200 [exp]	35.88	0.7574

Compare expression of checked genes

Potri.009G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.