Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02460 154 / 2e-43 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 147 / 2e-41 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G55370 143 / 5e-40 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G07640 136 / 2e-37 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G28810 134 / 1e-36 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 117 / 6e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G65590 117 / 2e-30 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 110 / 8e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 112 / 1e-28 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G21270 108 / 3e-28 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238400 [exp] 385 / 2e-134 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.010G205400 [exp] 215 / 1e-67 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.008G055100 [exp] 197 / 1e-60 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.006G084200 [exp] 195 / 6e-60 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.007G058200 [exp] 120 / 4e-31 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 117 / 1e-30 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.005G149100 [exp] 117 / 3e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 116 / 3e-30 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 115 / 3e-30 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016566 [exp] 158 / 2e-45 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 157 / 1e-44 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10005956 [exp] 149 / 4e-42 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 149 / 6e-42 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10040836 [exp] 144 / 7e-42 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10040305 [exp] 127 / 3e-33 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 114 / 1e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10014001 [exp] 113 / 3e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10007774 [exp] 112 / 6e-29 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 114 / 7e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G029500.2 pacid=42772879 polypeptide=Potri.009G029500.2.p locus=Potri.009G029500 ID=Potri.009G029500.2.v4.1 annot-version=v4.1 ATGGTGTTCTCTTCAGTTCCAGTCTATTTAGATCCTCCCAGCTGGCAGCAGCAGCAACCAAGCCAGCAACTAGGAGCATGCGATGAAAGTCCACAGCTTC CGCCTCTTCCTCCGCCACCTCATGTTGGTGGTAGTGGCACTGCTGGCTCAATTAGACCTGGTTCGATGTCTGATCGAGCTCGGTTGGCCAAGATACCTCA GCCAGAGGCAGCTCTAAAGTGCCCAAGGTGTGATTCTACAAACACCAAATTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCCCGCCACTTTTGCAAA ACCTGTCGGCGATACTGGACTAGAGGTGGTGCCCTTAGAAGTGTTCCTGTGGGAGGTGGATGCCGTAGAAACAAGAAAACCAAAAGCCAAAGTAGCTCCA AGTCCCCAGTTTCCAGTGAAAGGCAAATGGGTTCAACTTCCAGTACTTCCTCAAGTGCACTTCCATCGCAGATTATTGGTCATTTTCCTCAGCAACAAAC TCAATTTCCCTTCGTGACCTCTTTACATAATCTGACTCAATTTGGTGTGGGAAACATTGGATTAAACTTTGGTGGAATTCAGGGACAAATGGGATCAACA AGTGGTGCTAGTGGACAGGCTGGCATGGAATTTCAAATGGGAAGCGGTTCAGGAATGAGTAGCAGTTCCATTTTTTCAGCTGGAGGAGTGCAACAATTTC CTTTCTTTGAGTCTCCACCCGCAGGTTTATATCCTTTTCAAAGTGATCAAGGCGCTGAAGCACCGACTGGCATTCCTGGGGAAAGCAGCCAGCTTCGATC CATGGCTTCGAGCTCTAGGGTTTCTCAGTTAGCTCCAGTGAAGTCAGAAGGAAACCAAGGGTTAAATTTATCGAAGCCATATTTGGGTATCCCAGAAAAT AATCAGTACTACTGGGGTGGAAATACCTGGACAGATTTATCCGGTCTCAACTCTTCTTCCACCAGCCATTTCTTATGA
AA sequence Show only first row Show all	>Potri.009G029500.2 pacid=42772879 polypeptide=Potri.009G029500.2.p locus=Potri.009G029500 ID=Potri.009G029500.2.v4.1 annot-version=v4.1 MVFSSVPVYLDPPSWQQQQPSQQLGACDESPQLPPLPPPPHVGGSGTAGSIRPGSMSDRARLAKIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCK TCRRYWTRGGALRSVPVGGGCRRNKKTKSQSSSKSPVSSERQMGSTSSTSSSALPSQIIGHFPQQQTQFPFVTSLHNLTQFGVGNIGLNFGGIQGQMGST SGASGQAGMEFQMGSGSGMSSSSIFSAGGVQQFPFFESPPAGLYPFQSDQGAEAPTGIPGESSQLRSMASSSRVSQLAPVKSEGNQGLNLSKPYLGIPEN NQYYWGGNTWTDLSGLNSSSTSHFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	2.82	0.8819
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	2.82	0.9146
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	4.00	0.8868
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	4.69	0.8476
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	5.47	0.8866
AT4G21740			unknown protein		Potri.001G371800 [exp]	7.21	0.8444
AT2G30620			winged-helix DNA-binding trans...		Potri.013G042700 [exp]	8.24	0.8366	HON902
AT5G50000			Protein kinase superfamily pro...		Potri.012G079000 [exp]	8.83	0.7779
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	12.48	0.8742
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	14.00	0.7971

Compare expression of checked genes

Potri.009G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.