Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14255 62 / 2e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G04270 56 / 7e-09 DHHC-type zinc finger family protein (.1) AT2G33640 57 / 8e-09 DHHC-type zinc finger family protein (.1) AT3G56920 52 / 2e-07 DHHC-type zinc finger family protein (.1) AT5G41060 52 / 4e-07 DHHC-type zinc finger family protein (.1.2) AT5G20350 50 / 1e-06 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G05070 50 / 1e-06 DHHC-type zinc finger family protein (.1) AT3G09320 48 / 3e-06 DHHC-type zinc finger family protein (.1) AT2G40990 48 / 5e-06 DHHC-type zinc finger family protein (.1) AT3G56930 48 / 5e-06 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061800 [exp] 55 / 4e-08 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.002G186800 [exp] 52 / 2e-07 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 52 / 2e-07 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 52 / 3e-07 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.018G121200 [exp] 52 / 4e-07 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G020800 [exp] 52 / 5e-07 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 51 / 5e-07 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 51 / 6e-07 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.001G287000 [exp] 51 / 8e-07 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040833 [exp] 348 / 4e-120 AT2G14255 72 / 1e-13 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10016564 [exp] 224 / 1e-70 AT3G18620 50 / 1e-06 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 59 / 1e-09 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 57 / 4e-09 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10012455 [exp] 54 / 6e-08 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038029 [exp] 54 / 9e-08 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10038108 [exp] 53 / 2e-07 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10025157 [exp] 52 / 3e-07 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10008037 [exp] 52 / 3e-07 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10039043 [exp] 52 / 3e-07 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.009G029800.1 pacid=42772572 polypeptide=Potri.009G029800.1.p locus=Potri.009G029800 ID=Potri.009G029800.1.v4.1 annot-version=v4.1 ATGCAACAAATTCAGGATCAAAGAAAGAAGAAGGTGTTAGTAAGTTGCTTCAAACAAATTGGGCGATGTACAGTTTCGTGCATATTGGTTTTGTTAACTC AATTTGCTCTGACTTTAGTCCCCCACTTCTTCCCTGCTTCCTCTCTACTCGTCCAACTGACACTCTCAGTTGTGGCGCTAGTGTTTGTTTTGGGATTAGG GAGATGGTGCAGGCGGATTGTTGGAGTGTATGCATCCGCTCCAGCTCTCGTTTTCTTTAATCTAATCTTTATTTGGGCTGTCTATATCTTCATTGTTAGA CAAGCCATTCCGTATTTCATCAGTATTGTGTTCAACATAGAGGTTACCCTGCTCATTCTTGGTGTATGTAGTATCCTATCAAGTGATCCTGGTTTGGTAA CTCATGGATCTTCAGATGCGAACAAGCTCATTGAAACTAAAGCTTTCGGAGTTGAAGCTCATAACGAGGGTTCTGCTCTACTCAAGAGGGTGAGGTATTG TAAGAGTTGCAAAGCATATATAAAAGGATTTGATCACCATTGTCCTGCTTTTGGTAACTGTATAGGACAGAATAATTATGTCCTCTTCATGATTCTTCTA GCTGGATTCCTTACCACCGAAGCTTCTTACATCGTTTGCTCGTCCCAGTTTTCCAGAGGATCCCAGATTCTAGGTGGAACTTGGTTTGAGACTGATCTAG CTGGCAGCTTGGTTGTTAGCACAATGTTATTCTCTCTTCTCCAAGTGATATGGCAGGGGGTGTTCTTCACATGGCATCTGTATTGTATATGCTTCAACAT CAGGACTGACGAATGGATAAACTGGAAGAAATACCCAGAGTTTCAATTTGTCATTCAATCCCAACCAGGGGAAAGCTTTACTAGGGTTATGTTCAAAAAT CCATATGATAATGGCTATCTTCAAAATGTGAAGGAGTTTTTATCAGTACACGGCTGA
AA sequence Show only first row Show all	>Potri.009G029800.1 pacid=42772572 polypeptide=Potri.009G029800.1.p locus=Potri.009G029800 ID=Potri.009G029800.1.v4.1 annot-version=v4.1 MQQIQDQRKKKVLVSCFKQIGRCTVSCILVLLTQFALTLVPHFFPASSLLVQLTLSVVALVFVLGLGRWCRRIVGVYASAPALVFFNLIFIWAVYIFIVR QAIPYFISIVFNIEVTLLILGVCSILSSDPGLVTHGSSDANKLIETKAFGVEAHNEGSALLKRVRYCKSCKAYIKGFDHHCPAFGNCIGQNNYVLFMILL AGFLTTEASYIVCSSQFSRGSQILGGTWFETDLAGSLVVSTMLFSLLQVIWQGVFFTWHLYCICFNIRTDEWINWKKYPEFQFVIQSQPGESFTRVMFKN PYDNGYLQNVKEFLSVHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14255			Ankyrin repeat family protein ...		Potri.009G029800 [exp]	0	1
AT5G17240		SDG40	SET domain group 40 (.1)		Potri.004G081400 [exp]	3.00	0.7034
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.011G125300 [exp]	7.34	0.6768
AT2G36670			Eukaryotic aspartyl protease f...		Potri.016G096700 [exp]	11.00	0.7483
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074600 [exp]	17.43	0.6831
AT3G15650			alpha/beta-Hydrolases superfam...		Potri.001G173700 [exp]	17.66	0.6180
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	23.23	0.6253
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	37.62	0.6725
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.006G270601 [exp]	41.42	0.6056
AT5G54165			unknown protein		Potri.015G004800 [exp]	43.81	0.6187
AT1G54730			Major facilitator superfamily ...		Potri.013G027500 [exp]	45.23	0.6435

Compare expression of checked genes

Potri.009G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.