Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28840 619 / 0 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G07270 124 / 1e-30 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 122 / 6e-30 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G60070 77 / 7e-15 ankyrin repeat family protein (.1) AT2G31820 73 / 2e-13 Ankyrin repeat family protein (.1) AT5G02620 72 / 2e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 71 / 1e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 69 / 3e-12 Ankyrin repeat family protein (.1) AT3G04710 67 / 6e-12 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G40160 65 / 3e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238800 [exp] 785 / 0 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.015G141400 [exp] 134 / 5e-34 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 126 / 1e-31 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 125 / 3e-31 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 120 / 3e-29 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.007G099600 [exp] 73 / 1e-13 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 71 / 7e-13 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.005G069300 [exp] 71 / 9e-13 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 70 / 1e-12 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016561 [exp] 696 / 0 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 577 / 0 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10005754 [exp] 132 / 2e-33 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 125 / 4e-31 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10015503 [exp] 103 / 2e-23 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10019974 [exp] 101 / 7e-23 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015224 [exp] 68 / 7e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 65 / 5e-11 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 64 / 9e-11 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10041537 [exp] 63 / 2e-10 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.009G030000.1 pacid=42772845 polypeptide=Potri.009G030000.1.p locus=Potri.009G030000 ID=Potri.009G030000.1.v4.1 annot-version=v4.1 ATGGGTCAGGGACTGAGTTGTGCAGCGAGTCAAGAGCATGCGTTCTTCACTGCTGTGCAGTTGGGTGAATTCGACACCGTAAATGCTATGCTTGAGAGAG ACCCATCTCTCCTTCATCAAACTACTTATGATCGCCAGTATCCGCTACATATTGCTGCTGCCAATGGCCAGATCGAGATTTTAACAATGCTTCTGGAGCG ATCTGTGGATCCTGATATGGTGAATCGTCACAAGCAGACTCCGCTTATGTTGGCTGCAATGCATGGCAAAATCTCATGTTTGAAAAAGCTCATCGAAGCA GGGGCAAATATTTTGAAGTTTGATTCACTTAATGGAAGAACTTGCTTGCACTATGCTGCTTACTATGGCCATTCGGATTGCCTTCAAGCTATTATTTCTG CTGCTCAATCAAGCCCTGTTGCTGTTTCTTGGGGATATGCACGGTTTGTCAATATCAGAGATGGTAGAGGAGCAACACCATTGCATTTAGCAGCCCGTCA AAGACGGCCTGGATGTGTACATATCTTGTTAGGCAATGGTGCTCTTGTTTGTTCTTCGACAGGAGGATATGGTTCCCCGGGGAGCACTCCTCTTCATTTG GCAGCCAGAGGGGGATCTCTTGATTGTATCCGTGCATTGCTGGCGTGGGGGGCAGATCGTCTTCAAAGAGATGCATCTGGGAGAATACCCTATGTAGTTG CTTTGAAGCACAAAAATGGAATGTGTGCAGCCCTTCTTAATCCTTCATCAGCAGAGCCTCTTGTCTGGCCATCACCATTGAAGTTCATCAGTGAGCTGAA TCAAGAGGCAAAAGCTCTACTGGAGTGTGCCTTGATGGAGGCCAACAGGGAGAGGGAAAAGAATATATTGATGGAGGCCAACAGGGAGAGGGAAAAGAAC ATATTGAAGGGATCTGGGCATTCACTTCCATCTCCATCACATTCTGCTGATGGGACAGATTACAATATATCTGAGGCAAGCGATACAGAGGTGTGCTGCA TATGCTTTGAGCAGGTTTGTACAATTGAAGTTCAAGACTGTGGCCATCAGATGTGTGCACAATGCACACTAGCTCTCTGCTGCCATAACAAACCCAACCC TACAACCGCATGCCTTAACCCTCCAGTTTGTCCATTCTGTCGAAGCACCATTGTCCGTCTAGTGGTTGCTAAAATCAAGAACTGTAATGATGCTGATCAA GACATTGGGGAAATTGGTTCACCAAAACTGAGAAAGTCCAGGAAGTCACGGAACTTCAGCGAGGGAAGCAGTAGTTTCAAGGGGTTATCAGCAACATTTG GAAAAATGGGTGGCCGTGGCTCAGGAAGGATTGCTGCAGAAAATGAGTGGATGGATAAGCCTTGA
AA sequence Show only first row Show all	>Potri.009G030000.1 pacid=42772845 polypeptide=Potri.009G030000.1.p locus=Potri.009G030000 ID=Potri.009G030000.1.v4.1 annot-version=v4.1 MGQGLSCAASQEHAFFTAVQLGEFDTVNAMLERDPSLLHQTTYDRQYPLHIAAANGQIEILTMLLERSVDPDMVNRHKQTPLMLAAMHGKISCLKKLIEA GANILKFDSLNGRTCLHYAAYYGHSDCLQAIISAAQSSPVAVSWGYARFVNIRDGRGATPLHLAARQRRPGCVHILLGNGALVCSSTGGYGSPGSTPLHL AARGGSLDCIRALLAWGADRLQRDASGRIPYVVALKHKNGMCAALLNPSSAEPLVWPSPLKFISELNQEAKALLECALMEANREREKNILMEANREREKN ILKGSGHSLPSPSHSADGTDYNISEASDTEVCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLNPPVCPFCRSTIVRLVVAKIKNCNDADQ DIGEIGSPKLRKSRKSRNFSEGSSSFKGLSATFGKMGGRGSGRIAAENEWMDKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.009G030000 [exp]	0	1
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	5.29	0.7176
AT3G52105			unknown protein		Potri.016G053400 [exp]	6.92	0.6636
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080400 [exp]	9.16	0.7166
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.002G123800 [exp]	13.63	0.7103
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	20.19	0.6785
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	34.11	0.6946
AT1G49850			RING/U-box superfamily protein...		Potri.001G297000 [exp]	37.78	0.5818
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	38.07	0.6998
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	41.71	0.6670
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	46.43	0.6690

Compare expression of checked genes

Potri.009G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.