Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07630 884 / 0 PLL5 pol-like 5 (.1) AT2G28890 874 / 0 PLL4 poltergeist like 4 (.1) AT5G02400 588 / 0 PLL2 pol-like 2 (.1) AT3G09400 550 / 0 PLL3 pol-like 3 (.1.2) AT2G46920 348 / 4e-108 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 337 / 3e-104 PLL1 poltergeist like 1 (.1) AT3G16560 208 / 4e-59 Protein phosphatase 2C family protein (.1) AT3G51370 141 / 3e-37 Protein phosphatase 2C family protein (.1.2) AT4G38520 140 / 9e-36 Protein phosphatase 2C family protein (.1.2) AT3G12620 139 / 1e-35 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239300 [exp] 1283 / 0 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 665 / 0 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G089500 [exp] 369 / 1e-116 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 365 / 5e-115 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 358 / 3e-111 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 356 / 2e-110 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 205 / 7e-58 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 205 / 1e-57 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 202 / 1e-56 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016555 [exp] 981 / 0 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 981 / 0 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 421 / 2e-138 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 416 / 1e-136 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10004554 [exp] 370 / 1e-116 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 367 / 4e-116 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004793 [exp] 209 / 2e-59 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 209 / 3e-59 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10015047 [exp] 143 / 4e-37 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 141 / 3e-36 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.009G030600.1 pacid=42771600 polypeptide=Potri.009G030600.1.p locus=Potri.009G030600 ID=Potri.009G030600.1.v4.1 annot-version=v4.1 ATGGGAAACGGTTTTGGTAAACTGACGGCCTGTTTCACCGGAACTGGAGATGCTCGCCGGAGAAAGGATATATCGGTACTAAATCCACTAGACGAAGGTC TAGGTCACTCCTTTTGCTATGTGAGACCTGACCCGGCCCGATTATCCTCCTCCAAAGTACACTCAGAGGAAACAACCACCTTCCGTACCATATCCGGTGC CTCCGTCAGCGCCAACACGTCAACGCCACTCTCCACTGCCTTCATCGATCCTTATGTATATAACACCATCGATCGAGCTGCTGCTTTTGAGAGCTCAACT TCTTTTGCTTCGATTCCTCTGCAACCAATTCCCAGAAGTCTATTTGGGTCCATCAATTCTGGCCCCTTAACAGGAAACTCGGCCCTGATTCCTTGTTCAG GTCCGATGGAGAGAGGGTTCTTGTCGGGTCCGATTGAGAGAGGATTCATGTCAGGTCCGTTGGATCGTGGGTTGTTCTCGGGTCCGCTGGAAAAGGGCAG TTCTGATCAGTTTCAAAGAAGCTTTTCCCATGGTGGTTTTGCTTTTAGATCCAGATCAGGAAAAAGGTCGCTGATTCGAGTCTTACAAAGAGCAATATCT AAAAAGATAACTCGTGGACAGAACTCGATTGTAGCTCCTATAAAAGGGGGTGTTGGTGTTGGTGTTGTTAAAGAACCCGAGTGGATACTGAGTTCAGAGA AGCAGAATGAGTTGACAGTGAGTAGTCTTAATTTGAGTAGCGATGGCAGTTTAGAGGATGATGATTCTTTAGAGAGTCAAAATCTTCAATGGGCTCAAGG GAAAGCAGGGGAGGATAGGGTCCATGTTGTTGTATCAGAGGAGCATGGTTGGGTTTTTGTTGGGATTTATGATGGATTCAATGGCCCAGATGCGCCTGAT TATCTTTTATCCAATCTCTACTCTGCTGTGCATAAAGAGCTTAAAGGTTTGTTGTGGGATGATAAGTTTGATTCTGATAAAATATCTGCCCCTGCATCTT CCCCTGTTCAAACAGATACTAGTAATTCTGTTGAAAGTGCTAATTCAAGATTGGAAAATGTGTTACATAACAGTGAAACTAATGGGAATTGCGGAAATGA TCAATGTTATCGGTATTTGGATCGAGATAATCATCCGAGTGCGAGTTGGGAAGTTGGTTTTGATATGAATTTGAAGAGAAAAAAGAGCAGGAGTTCCAAA GGGAAGTATAGAGGAGCTGCTAAAAAATGGGAGGAGAATCAGAGGAGATGGAAATGCGAATGGGACAGGGAAAGAATGGAACTTGATAAGAGATTAAAGG AGCAATTGAATCGATCGGGATCAGATACTAGCCCAATAAACCATGCAGATGTGTTGGAAGCTTTGTCTCAGGCTTTGAAGAAAACAGAGGAGTCATATTT GGATATTGCAGACAAAATGCTAGTGGAGAATCCGGAGCTGGCTTTAATGGGTTCTTGTGTTCTTGTGATGTTAATGAAGGGCGAAGATGTTTATGTGATG AATGTGGGTGATAGTCGAGCAGTATTAGCACAGAAGGCAGAGCCTGATTATTGGCTAGGGAAGATTAGACAGGACTTGGAAAGAATTAATGAGGAAACAT TGCATGATCTTGAGGCTTCTGATGGTGAAAGATCAAATTCAATGCCTAGTTTGACGGCCTCACAGCTGAGTGTTGATCATAGCACCAGTGTGGAAGAGGA AGTGCAAAGAATAAAAAATGAACATCCAGATGATGCTTGTGCTTTGTTGAATGACCGGGTGAAAGGTTCATTGAAGGTTACTCGGGCATTTGGTGCTGGT TTTCTCAAGCAGCCTAGATGGAACGACGCACTTCTAGAGATGTTCAGAATTGACTACATTGGCAATTCCCCTTACATAACTTGTTTACCATCGCTCTACC ACCATAGACTCGGCCCAAAAGACAGGTTTCTGATTTTATCATCCGATGGGCTTTATCAATACTTAACAAATGAAGAAGCTGTTTATGAAGTTGAGCTTTT CATCACATTGCAACCCGAAGGAGATCCAGCTCAACATCTGGTTGAGGAAGTTCTGTTCCGTGCAGCCAAGAAAGCTGGTATGGACTTCCACGAGTTGCTC CAAATACCACAGGGAGATCGAAGGCGGTACCATGATGATGTTTCCATCATTGTTATTTCTTTAGAGGGAAGGATATGGAGATCGTGTGTATAA
AA sequence Show only first row Show all	>Potri.009G030600.1 pacid=42771600 polypeptide=Potri.009G030600.1.p locus=Potri.009G030600 ID=Potri.009G030600.1.v4.1 annot-version=v4.1 MGNGFGKLTACFTGTGDARRRKDISVLNPLDEGLGHSFCYVRPDPARLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFIDPYVYNTIDRAAAFESST SFASIPLQPIPRSLFGSINSGPLTGNSALIPCSGPMERGFLSGPIERGFMSGPLDRGLFSGPLEKGSSDQFQRSFSHGGFAFRSRSGKRSLIRVLQRAIS KKITRGQNSIVAPIKGGVGVGVVKEPEWILSSEKQNELTVSSLNLSSDGSLEDDDSLESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPD YLLSNLYSAVHKELKGLLWDDKFDSDKISAPASSPVQTDTSNSVESANSRLENVLHNSETNGNCGNDQCYRYLDRDNHPSASWEVGFDMNLKRKKSRSSK GKYRGAAKKWEENQRRWKCEWDRERMELDKRLKEQLNRSGSDTSPINHADVLEALSQALKKTEESYLDIADKMLVENPELALMGSCVLVMLMKGEDVYVM NVGDSRAVLAQKAEPDYWLGKIRQDLERINEETLHDLEASDGERSNSMPSLTASQLSVDHSTSVEEEVQRIKNEHPDDACALLNDRVKGSLKVTRAFGAG FLKQPRWNDALLEMFRIDYIGNSPYITCLPSLYHHRLGPKDRFLILSSDGLYQYLTNEEAVYEVELFITLQPEGDPAQHLVEEVLFRAAKKAGMDFHELL QIPQGDRRRYHDDVSIIVISLEGRIWRSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	0	1
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	3.16	0.6394
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.001G393800 [exp]	5.38	0.5925	NCED3.1
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.001G256000 [exp]	10.09	0.7111
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	32.44	0.6279	Pt-WRKY22.2
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G139300 [exp]	45.95	0.5638
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.009G017300 [exp]	52.30	0.5602
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	53.83	0.5809
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	55.56	0.5729	SNF4.3
AT1G02460			Pectin lyase-like superfamily ...		Potri.002G190600 [exp]	56.08	0.6082
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	63.03	0.5294

Compare expression of checked genes

Potri.009G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.