Plant FIBer expression Database

Potri.009G030700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02390 99 / 7e-21 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
AT1G07620 71 / 3e-12 ATOBGM GTP-binding protein Obg/CgtA (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G239500
[exp]
1241 / 0 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Potri.016G095500
[exp]
214 / 5e-58 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Potri.014G084600
[exp]
62 / 1e-09 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Potri.002G160000
[exp]
50 / 8e-06 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040814
[exp]
100 / 2e-21 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Lus10016715
[exp]
82 / 1e-15 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Lus10036009
[exp]
69 / 1e-11 AT5G02390 196 / 9e-53 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12552 DUF3741 Protein of unknown function (DUF3741)
PF14309 DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence
>Potri.009G030700.2 pacid=42771418 polypeptide=Potri.009G030700.2.p locus=Potri.009G030700 ID=Potri.009G030700.2.v4.1 annot-version=v4.1
ATGGGGAGACAGTTGGAGCGCCAAGTTTCGGGTGTTGGATTTGAGGACTATCATCCAGGTTGCATGTGGGGAATACTTCAAATTCTTGACTACCATTATT
GGCACAGTCCTAAAAAATCACCTCTGCGCAGAAAGCATGGCAGATGCTGCCAAAATCCAAAAACAATCTCTTTTGATCATTACACCAATGAAGTACAGGA
ATATTTGAGTGCTGAAGCAGTCCCCTTGCTGGTTGAACAGCAAACTACAAAGACTAGCTCCCCCAACAGAATTGCTAGAAAAGCCCAGATACAAGCTTTA
ATTGCCAAGGAGAAATTTTCAAGAACACGGTCACAGAAAGCTGATCCAGTCCACCAATTAGAAGCTTCAGAAAATAGCGTTGCTACAATAAATAGTGATT
GGAGAAATCCAATCATTATTCTTCACAAAAGTGCTGATACTGCTGCCTCCAGATTTCAGGTTCCATCAGTGTCCAAGACAACTGAAGAACTAGTTGCAGA
CAATAGTACGTATCATCTGCCTTGCACTGTGAATGCCAGTGACTGCTCAAAACAAAACCAGCTTTCTGACGAGGATGCATTTTCCTTGGAGAACTGTGAT
AACTCATTAAACCTTTCACATGCTAAGCGTCTCAACAGAGAAATTTCATGCCCTCAGTTTAAGGAGAGGGTGGATTTTATGGACATCCTTAAGGCAAATG
AAAAGCTGTTGGAAATCCTACAGGATCCAGGCGTTCAGAACACCCATGTCCAGCAGACTTCCAAAGCAAAGGTAAGATTAAGGAGGTCAGGATCATTTCC
TGCAGCTGACTGTTCACACATTACATTTGTTAGGCCTAGTACAATTGAGCACAAGCAGAAGGAAATTTGGTCCTTTCCAAAGGGAGTGAAGCCATCCATC
GGGAATCCAGCACCAAGGTCTACTGCATCCAAGTCTTTGGAAGATTTTTATGAGAAGTCAATAGATTTAAAGGTTAGCAATCATGGAGTCACTTCTATTG
ATCAAGAAACACAGTTTTCTTCTCTCGAGTCATCTCAGGGATTACATAAATACAAGTGGCATCTTTCATTTATGAGTCCTTTTAAAGGTCTTAAGAAAAA
AATAAAGTATGCACTCACAGAAAGCAAAAGGGAGAGTGACCATGAATCAACAAATACAAGTCGCTACGAAGTTCCTTCTGGATACAAGTTTTCCACCGAT
GAGGAAGAGATGTCTAAGAAGTTGAAGGAAATCACAATTCATCAGGATGGTGTAGAAAATCCCACAAGTTTTCAGGAGACGAATAGTTTCGATAATGATT
TCAGCAAAGCTCAAGCCCCACGCATAAGAAGAGGATCCTCTCTAAAGGAGTCACTGGATGGTTATGCTCGATTGTTTGAGTACAATTTCAGTAAACAGGT
CAAGTGGAACCAGTATCAATCTAAAAGCTTAAAATTGTCGAGTGAAGATAAATCTCAATCAAGTGGTCTGAAATCCTTCAGAAGGAGACTCTCTCTGCCA
GATATCGAGTCTATATATCTCATTCCAAATGAGTCCTCAAGTGATGCGCTTAGTTCAAATATGTCAACTACGACTGGAATGGACTATGATGCAAATGTTA
AAACTGACATTCTTAATGACTTGAAGTCCGTAAGCACTCCTGAAGTTAGAAAACAATTCAAACGACTAGATACTGTTGAAGAAACTGAACTTCAGAGCAA
CATGGAAGAAAGAGCTGGCAGCATGGACAATAATGAATGTTCAGGTGGTCTAATGGCAAGTATCAACGAAGGAAGTGCTATTACAAGTGAACTAAATCAG
GATACAATGGGACCTGAAAGGGGAGATCAGAGTTCTCTGAGTAATCAGGGGATTGGTTCAGCAATCACCTCCATTAGAGAGCATGAAGAACAAAGTCCGA
TTTCAGTTCTTGAGACTCATTTTCGAGATGATATAACTTGCCTAGTAGAGTTCCCAATGTCAGAAGGTTCAGAGCTGCATCCTGGGCACATTTGTGTTGA
TGAACCAGATTCTCCTGTCACTTTACAAGACAGGTCAACTGGAGATTCCTTGGAAGAAACTCGCAGCTCTACCAGCCATGCGAATGCAGAAAATGCAAGC
ACAATGGTTGGTGCTCGATTCCTTCATTTGGAATTGAACAGGCCAGAAGATGATGCTGATTTCAATTATTTGAGAGATGTGCTTGAGGTGTCCGGCTTCA
TTGGGCCAGAGTCCCTTGGAACATGGTATTCATTAGAGCAGCCCTTGAGTCCAACATTGTTTAAGGCTTTGGAAGCTTATTTGCACAAAGGACTTGAATC
TTCCTCGGAGGATGTTGCCTACAATTGTGATCACCTGCTTCTGTTTGATTTGATTAACGAGGAACTGCTCGACATATATGAGAGCTCATTAGCCTACTTC
CCCAAGCTCTTCTCTTTCACTCAACGCGTCCGTCCACTGCCCAGAGGAAATAATGTTATTGATGAAGTCTGGAAAAGAATTAGCTGGCACAGGAGGTCAA
CCTCAGAAATGGAGCAATCAATAGAGGATATAGTAGCTCGAGACTGCGAAAAAGGTGATGGTTGGATGAACCTTCAATTGGATGCTGAGGATGCAGCGCT
AGACCTGGAAGATTTGATTTTCGACGAGCTTGTAGATGAAGTTATGTGTTCATATACACGGTAG
AA sequence
>Potri.009G030700.2 pacid=42771418 polypeptide=Potri.009G030700.2.p locus=Potri.009G030700 ID=Potri.009G030700.2.v4.1 annot-version=v4.1
MGRQLERQVSGVGFEDYHPGCMWGILQILDYHYWHSPKKSPLRRKHGRCCQNPKTISFDHYTNEVQEYLSAEAVPLLVEQQTTKTSSPNRIARKAQIQAL
IAKEKFSRTRSQKADPVHQLEASENSVATINSDWRNPIIILHKSADTAASRFQVPSVSKTTEELVADNSTYHLPCTVNASDCSKQNQLSDEDAFSLENCD
NSLNLSHAKRLNREISCPQFKERVDFMDILKANEKLLEILQDPGVQNTHVQQTSKAKVRLRRSGSFPAADCSHITFVRPSTIEHKQKEIWSFPKGVKPSI
GNPAPRSTASKSLEDFYEKSIDLKVSNHGVTSIDQETQFSSLESSQGLHKYKWHLSFMSPFKGLKKKIKYALTESKRESDHESTNTSRYEVPSGYKFSTD
EEEMSKKLKEITIHQDGVENPTSFQETNSFDNDFSKAQAPRIRRGSSLKESLDGYARLFEYNFSKQVKWNQYQSKSLKLSSEDKSQSSGLKSFRRRLSLP
DIESIYLIPNESSSDALSSNMSTTTGMDYDANVKTDILNDLKSVSTPEVRKQFKRLDTVEETELQSNMEERAGSMDNNECSGGLMASINEGSAITSELNQ
DTMGPERGDQSSLSNQGIGSAITSIREHEEQSPISVLETHFRDDITCLVEFPMSEGSELHPGHICVDEPDSPVTLQDRSTGDSLEETRSSTSHANAENAS
TMVGARFLHLELNRPEDDADFNYLRDVLEVSGFIGPESLGTWYSLEQPLSPTLFKALEAYLHKGLESSSEDVAYNCDHLLLFDLINEELLDIYESSLAYF
PKLFSFTQRVRPLPRGNNVIDEVWKRISWHRRSTSEMEQSIEDIVARDCEKGDGWMNLQLDAEDAALDLEDLIFDELVDEVMCSYTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02390 DAU1 DUO1-activated unknown 1, Prot... Potri.009G030700
[exp]
0 1
AT1G66920 Protein kinase superfamily pro... Potri.017G116955
[exp]
4.47 0.9348
AT5G38240 Protein kinase family protein ... Potri.015G018050
[exp]
4.89 0.9318
AT1G64950 CYP89A5 "cytochrome P450, family 89, s... Potri.007G088154
[exp]
5.91 0.9332
AT2G38340 AP2_ERF DREB2E, DREB19 dehydration response element-b... Potri.016G126100
[exp]
6.00 0.9269 Pt-DREB2.6
AT1G05560 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP... Potri.002G236400
[exp]
6.00 0.9366 IAGLU.2
AT3G08870 Concanavalin A-like lectin pro... Potri.006G103200
[exp]
7.34 0.9328
AT5G15130 WRKY ATWRKY72, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Potri.015G064100
[exp]
7.41 0.9295
AT3G60690 SAUR-like auxin-responsive pro... Potri.014G066900
[exp]
10.24 0.9262
AT3G16510 Calcium-dependent lipid-bindin... Potri.001G070400
[exp]
12.24 0.9158
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Potri.013G018400
[exp]
15.00 0.9034

Potri.009G030700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.