Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09390 65 / 2e-15 ATMT-K, ATMT-1, MT2A ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) AT5G02380 54 / 2e-11 MT2B metallothionein 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100001 [exp] 98 / 1e-28 AT3G09390 64 / 4e-15 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) Potri.001G041268 [exp] 94 / 3e-27 AT3G09390 42 / 1e-06 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) Potri.001G040200 [exp] 94 / 3e-27 AT3G09390 42 / 1e-06 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) Potri.001G239650 [exp] 94 / 4e-27 AT3G09390 60 / 1e-13 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) Potri.013G131200 [exp] 93 / 1e-26 AT3G09390 62 / 2e-14 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1) Potri.006G085200 [exp] 75 / 2e-19 AT3G09390 59 / 3e-13 ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, metallothionein 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016546 [exp] 63 / 8e-15 AT5G02380 40 / 5e-06 metallothionein 2B (.1) Lus10040811 [exp] 56 / 5e-12 ND / Lus10024396 [exp] 52 / 2e-10 AT5G02380 50 / 1e-09 metallothionein 2B (.1) Lus10025350 [exp] 51 / 4e-10 AT5G02380 51 / 3e-10 metallothionein 2B (.1) Lus10025349 [exp] 51 / 5e-09 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01439 [poplar] [flax] Metallothio_2 Metallothionein
Representative CDS sequence Show only first row Show all	>Potri.009G030800.5 pacid=42772080 polypeptide=Potri.009G030800.5.p locus=Potri.009G030800 ID=Potri.009G030800.5.v4.1 annot-version=v4.1 ATGTCTTGCTGTGGAGGAAACTGTGGCTGCGGCTCTGGATGCAAGTGCGGCAGTGGCTGCAATGGATGCAGCATGTACCCAGACTTGAGTTTCTCCGAGA CCACCACAAGTCAGACAATCATTGCTGGTGTAGCTCCAGTTAGGATGTACGTGTTCTACGAGAGCTCTGAGATGAACTTTGGTGCTGAGAATGGCTGCAA ATGTGGATCAAACTGCACCTGTGATCCATGCTCCTGCAAATGA
AA sequence Show only first row Show all	>Potri.009G030800.5 pacid=42772080 polypeptide=Potri.009G030800.5.p locus=Potri.009G030800 ID=Potri.009G030800.5.v4.1 annot-version=v4.1 MSCCGGNCGCGSGCKCGSGCNGCSMYPDLSFSETTTSQTIIAGVAPVRMYVFYESSEMNFGAENGCKCGSNCTCDPCSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.009G030800 [exp]	0	1
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.017G107300 [exp]	5.47	0.8777
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	6.70	0.8932
					Potri.003G152701 [exp]	13.07	0.8646
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.004G202500 [exp]	14.83	0.8538
					Potri.001G379400 [exp]	15.96	0.8437
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.002G230700 [exp]	17.83	0.8696
					Potri.010G230433 [exp]	19.44	0.8372
AT4G30460			glycine-rich protein (.1)		Potri.006G178200 [exp]	22.44	0.8648
AT4G14385			unknown protein		Potri.002G038700 [exp]	23.36	0.8041
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069600 [exp]	24.49	0.7520

Compare expression of checked genes

Potri.009G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.