Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07590 697 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 174 / 2e-47 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 165 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 131 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 122 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15590 120 / 7e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 111 / 8e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 100 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 96 / 3e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 91 / 3e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 170 / 5e-46 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 159 / 5e-42 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 147 / 9e-38 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.005G208900 [exp] 130 / 2e-32 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G157400 [exp] 124 / 2e-30 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 119 / 9e-29 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 115 / 3e-27 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 102 / 4e-23 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G048500 [exp] 100 / 9e-23 AT5G09450 446 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042757 [exp] 758 / 0 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029724 [exp] 754 / 0 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012112 [exp] 165 / 3e-44 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 157 / 4e-41 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10010430 [exp] 154 / 2e-40 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042574 [exp] 129 / 6e-32 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 122 / 2e-29 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 112 / 9e-27 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024781 [exp] 109 / 4e-25 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 103 / 4e-23 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G030900.5 pacid=42771939 polypeptide=Potri.009G030900.5.p locus=Potri.009G030900 ID=Potri.009G030900.5.v4.1 annot-version=v4.1 ATGCAGGCACTAGCTCTTTTGAGGCATCGCCGGTTCTCACAAACAATTAATCAAACACTTTTTATCCCCTCTTTATTTGTCTATCAAACACCTTATACTT GCTTCAACTTTCTAAATACCCACACAATTGATAAATTTCCCAAGAAAAGCTTAGACCCAGAAGGACCGAAGTGCTTATCTTCGAGAATTGAGAAACTTCC GAGAGGAGAATCAGTTGGATATGCCTTTCAAAGTTGGATGGGCGAGGGTTTTCCCATTCATCGAGGTGATGTTTTTCACACAATTAATCGCTTAAGGAAG CTCAGATTAAACAAACGCGCACTTGAGGTGATGGAATGGGTAGTAAGGGAGAGGCCCTACAGGCTCAAGGAACTAGACTACTCTTATTTGTTGGAATTCA CAACCAAACATCATGGGATATCACATGGCGAAAAGCTCTTCTTGCATGTCCCGTCTGAGTTTCAGAACGAGTTGCTGTATAACAATCTTGTAATTTCATG CTTGGAAAAAGGTGTCATTAGGCTTTCACTTGATTACATGAAGAAAATGAGGGAACAAGGTCATCCCATTTCATATTTGATTTTCAACCGCCTTATAATC CTCCATTCCTCACCTGGCAGTAGGAAAATGATCCCGAAAATCCTTGCTCAAATGAGGGCTGATAAGGTGGTTCCCCATGTTTCAACATATAATATCCTGA TGAAGATTGAAGCAAATGAACATAATGTTGATGGGTTAGTGAAGGTATTTAATGATATGAAGAGATTTAAAGTTGAGCCGAATGAAGTATCTTTCTGCAT ATTAGCTACCGCGCATGCAGCGGCAAGGTTGTATACTGTGGCTGAAGCATATGTTGAAGCTGTGGAGAAGTCATGTAGTGGAGACAACTGGTCAACACTT GATGTTTTGATCATATTGTACGGGCATTTAGGAAAGGAGAAGGAACTAGAAAGAACTTGGGGCATTGTACTAGAACTGCCTCATGTTAGGTCTAAAAGTT ACATGCTTGCAATTGAAGCATATGGTAAAATTGGACAGCTTAGCCGAGCTGAAGAGCTTTGGTTAGAGATGAAGTCAATACATGGGTTGAGATCAACTGA GCAGTTCAATTCCATGTTATCCGTGTATTGTAAACATGGGCTTATTAAGAAAGCAACTGGGAATTTTAGGGAAATGGAGATAAATGGGTGCAAAGCAAAT TCCATAACTTTTCGTCATCTTGCATTGGGTTGTTTAAAGGCTAACTTGGTGGAGGAAGCCTTAAAGACTCTAGAAATGGGGAAAAACTTGACAACAAGCA ATAGGGTAAAGAATTCAACCCCATGGTTGGAGACCACTCTATCAATAATTGAACTTTTTGCAGAAAAGGGTGATGTAGTCAACGTTGAGAAATTGTTTGA AGAACTTGCGAAAGCAAAGTACGTAAGGCATACATTTGTATTCAATATTTTAATAAAGGCTTACGTGAAAGCCAAGATTTACAGTCCAAATCTCTTGAGA AGGATGATTTTAGGGGGTGCTAGGCCAGATGCTGAGACATATAGCCTGATCAAACTTGCTGAGCAGTTTCGACCCTGA
AA sequence Show only first row Show all	>Potri.009G030900.5 pacid=42771939 polypeptide=Potri.009G030900.5.p locus=Potri.009G030900 ID=Potri.009G030900.5.v4.1 annot-version=v4.1 MQALALLRHRRFSQTINQTLFIPSLFVYQTPYTCFNFLNTHTIDKFPKKSLDPEGPKCLSSRIEKLPRGESVGYAFQSWMGEGFPIHRGDVFHTINRLRK LRLNKRALEVMEWVVRERPYRLKELDYSYLLEFTTKHHGISHGEKLFLHVPSEFQNELLYNNLVISCLEKGVIRLSLDYMKKMREQGHPISYLIFNRLII LHSSPGSRKMIPKILAQMRADKVVPHVSTYNILMKIEANEHNVDGLVKVFNDMKRFKVEPNEVSFCILATAHAAARLYTVAEAYVEAVEKSCSGDNWSTL DVLIILYGHLGKEKELERTWGIVLELPHVRSKSYMLAIEAYGKIGQLSRAEELWLEMKSIHGLRSTEQFNSMLSVYCKHGLIKKATGNFREMEINGCKAN SITFRHLALGCLKANLVEEALKTLEMGKNLTTSNRVKNSTPWLETTLSIIELFAEKGDVVNVEKLFEELAKAKYVRHTFVFNILIKAYVKAKIYSPNLLR RMILGGARPDAETYSLIKLAEQFRP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07590			Tetratricopeptide repeat (TPR)...		Potri.009G030900 [exp]	0	1
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	6.32	0.8788
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	10.19	0.8528
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	10.95	0.8457
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	15.36	0.8429
AT4G20020			unknown protein		Potri.004G218800 [exp]	16.24	0.8291
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	17.74	0.8334
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	32.17	0.8101
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.010G230200 [exp]	33.57	0.7930
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G158200 [exp]	36.87	0.7986
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	40.79	0.8018

Compare expression of checked genes

Potri.009G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.