Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55440 358 / 4e-126 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) AT2G21170 263 / 6e-88 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240300 [exp] 393 / 5e-140 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 372 / 2e-131 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 365 / 1e-128 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.009G129500 [exp] 275 / 2e-92 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.004G168000 [exp] 271 / 5e-91 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005461 [exp] 380 / 5e-135 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10040807 [exp] 377 / 2e-133 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 377 / 2e-133 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 348 / 6e-119 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10012171 [exp] 270 / 1e-90 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 247 / 1e-81 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00121 [poplar] [flax] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Potri.009G031200.2 pacid=42770746 polypeptide=Potri.009G031200.2.p locus=Potri.009G031200 ID=Potri.009G031200.2.v4.1 annot-version=v4.1 ATGGTCAGAAAATTCTTCGTCGGCGGCAACTGGAAATGTAATGGGACCGCTGAGGAGGTGAAGAAGATTGTCACCGTGTTAAGTGAAGCTGAGGTTCCAT CTGAGGATGATGTCGAGGTTGTTGTGAGCCCTCCATTTGTGTTTCTTCCTGTGGTAAAAGGTTTACTGCGACCTGATTTCCAAGTAGCCGCCCAAAATTG CTGGGTTCGCAGAGGTGGTGCTTTTACTGGAGAGATTAGCGTTGAGATGCTCGTGAATTTGGGCATTCCCTGGGTGATTCTGGGCCATTCTGAACGAAGA TCTCTGTTAAATGAGTCAAATGAGTTTGTTGGAGACAAAGTTGCTTATGCACTTTCTTTAGGCTTGAAAGTGATTGCATGTGTCGGTGAGACACTTCAGC AGAGAGAGTCAGGATCTACAATGGCTGTTGTGGCTGCACAAACAAAAGCAATTGCAGCTAATGTTTCATATTGGGACAATGTTGTTATGGCCTATGAGCC AGTTTGGGCCATCGGTACAGGAAAGGTTGCAACACCTGCTCAGGCTCAAGAAGTCCATCTTGAATTGAGGAAATGGTTCCATGACAATGTTGGTGCTGAA GTTGCTGCGTCAACTAGAATTATCTATGGAGGTTCTGTAAATGGAGCAAACTGCAAAGAGTTGGCAGGACAACCAGATGTTGATGGATTTCTAGTTGGTG GAGCTTCTCTCAAGCCGGAGTTCATTGATATCATCAAATCTGCAACAGTGAAGAGTCAACTGTGA
AA sequence Show only first row Show all	>Potri.009G031200.2 pacid=42770746 polypeptide=Potri.009G031200.2.p locus=Potri.009G031200 ID=Potri.009G031200.2.v4.1 annot-version=v4.1 MVRKFFVGGNWKCNGTAEEVKKIVTVLSEAEVPSEDDVEVVVSPPFVFLPVVKGLLRPDFQVAAQNCWVRRGGAFTGEISVEMLVNLGIPWVILGHSERR SLLNESNEFVGDKVAYALSLGLKVIACVGETLQQRESGSTMAVVAAQTKAIAANVSYWDNVVMAYEPVWAIGTGKVATPAQAQEVHLELRKWFHDNVGAE VAASTRIIYGGSVNGANCKELAGQPDVDGFLVGGASLKPEFIDIIKSATVKSQL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	0	1
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	1.00	0.9688
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	2.23	0.9533
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	2.44	0.9584
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	3.74	0.9433
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	4.00	0.9536
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	5.19	0.9574
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.004G156900 [exp]	5.29	0.9371	Pt-RER1.2
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	5.47	0.9370
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	5.47	0.9403
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	6.92	0.9436

Compare expression of checked genes

Potri.009G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.