Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28930 603 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 597 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 541 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 495 / 1e-175 BIK1 botrytis-induced kinase1 (.1) AT2G02800 483 / 2e-170 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 470 / 1e-165 PBL1 PBS1-like 1 (.1.2) AT1G14370 461 / 8e-162 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G01300 462 / 3e-161 Protein kinase superfamily protein (.1) AT5G15080 460 / 2e-160 Protein kinase superfamily protein (.1) AT3G28690 455 / 2e-159 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240400 [exp] 740 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 608 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 580 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 579 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.010G093700 [exp] 494 / 5e-175 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 491 / 2e-173 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 469 / 6e-164 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 467 / 4e-163 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 464 / 5e-162 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016537 [exp] 612 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 610 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 604 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 602 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10024391 [exp] 599 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 595 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 560 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 557 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 548 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012850 [exp] 478 / 2e-168 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G031300.1 pacid=42772297 polypeptide=Potri.009G031300.1.p locus=Potri.009G031300 ID=Potri.009G031300.1.v4.1 annot-version=v4.1 ATGGGGATTTGCTTGAGTGCCCAAATTAAAGCTGAGAGCTCATGCAGCACAGGGTTGAGTTCAAAGAATGCTAGCACATATGGGACTGATCTGAGCAGTA CGAGTAGCAAGGTCTCATCTCTTTCAGTGCCACCCACTCCTCGGAGTGAGGGTGAGATCTTGCAATCCTCTAATCTGAAGAGCTTCAGTTTTTCTGATCT CAAGATGGCCACCAGGAATTTCCGTCCTGATAGTGTCCTAGGAGAAGGTGGTTTTGGTTCTGTTTTTAAGGGATGGATTGATGAGCAAACATTTTCTGCT GCCAAGCCTGGAACTGGAATGGTTATTGCGGTGAAAAGGCTTAACCAAGATGGTTTCCAAGGTCACAAGGAGTGGCTGGCGGAAGTAAATTATCTGGGGC AGCTCTATAATCCTCACCTTGTGAAGCTGATTGGCTATTGCTTAGAGGATGAACACCGACTCTTGGTGTATGAATTTATGCCTCGAGGCAGTTTGGAAAA TCATTTATTTAGAAGAGGTTCTTATTTCCAACCACTTTCTTGGAACCTCCGAATGAAGGTTTCTCTTGGTGCTGCAAAGGGGCTTGCATTTCTTCATAGT GCTGAAACGAAAGTAATATATAGGGACTTCAAGACTTCTAACATTCTGCTTGATTCGAAATACAATGCAAAACTTTCTGATTTTGGGCTGGCCAAAGATG GGCCGACTGGTGACAAGAGTCATGTATCTACCAGGGTTATGGGGACCTATGGTTATGCTGCTCCAGAATATCTAGCTACAGGGCATCTAACTGCCAAGAG TGATGTCTATAGCTTTGGAGTTGTTTTGCTAGAAATGTTATCTGGCAGGAGAGCAGTTGATAAAAATCGCCCATCTGGAGAGCACAATCTTGTCGAATGG GCTAAACCCTATCTAGCAAACAAACGCAAGATCTTTCGCATCCTAGATAGTCGTCTTGAAGGTCAGTATTCAATGGATGTTGCCTATAAGGTCTCTACCC TTGCGCTACGTTGCCTATCCATAGAAACCAAGTTTCGACCAACTATGGATGAGGTTGTGACAGCATTGGAGCAGCTCCAGGATTCCAAAGAAACTGGTAC TGCCAATGGCCATGTGGGCAACAAGCCCCGAATACGTAGACGAAGTGCCAATGATGCAACTGGTGGAGGGAGTATTGCTGCATATCCTCGGCCCTCTGCA TCCCCGCTTTATGCGTGA
AA sequence Show only first row Show all	>Potri.009G031300.1 pacid=42772297 polypeptide=Potri.009G031300.1.p locus=Potri.009G031300 ID=Potri.009G031300.1.v4.1 annot-version=v4.1 MGICLSAQIKAESSCSTGLSSKNASTYGTDLSSTSSKVSSLSVPPTPRSEGEILQSSNLKSFSFSDLKMATRNFRPDSVLGEGGFGSVFKGWIDEQTFSA AKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYNPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNLRMKVSLGAAKGLAFLHS AETKVIYRDFKTSNILLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAVDKNRPSGEHNLVEW AKPYLANKRKIFRILDSRLEGQYSMDVAYKVSTLALRCLSIETKFRPTMDEVVTALEQLQDSKETGTANGHVGNKPRIRRRSANDATGGGSIAAYPRPSA SPLYA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	0	1	APK1.1
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	1.41	0.8698
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	3.16	0.8514
AT1G75210			HAD-superfamily hydrolase, sub...		Potri.014G196700 [exp]	7.21	0.8645
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	8.66	0.8403	Pt-MYB.42,MYB181
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	9.21	0.8368
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	9.48	0.8365
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	9.74	0.8628	Pt-EU3.1
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.002G169400 [exp]	9.79	0.8435
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	10.81	0.8645
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	11.40	0.8426	DAO.3

Compare expression of checked genes

Potri.009G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.