Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07540 485 / 8e-164 MYB TRFL2 TRF-like 2 (.1) AT3G12560 404 / 1e-132 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT3G46590 395 / 7e-130 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G13820 380 / 6e-123 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 361 / 3e-116 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 164 / 8e-45 MYB TRFL4 TRF-like 4 (.1) AT1G17460 62 / 1e-09 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 60 / 5e-09 MYB TRFL6 TRF-like 6 (.1.2) AT2G37025 57 / 3e-08 TRFL8 TRF-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241600 [exp] 1114 / 0 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.008G057300 [exp] 564 / 0 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.010G202400 [exp] 560 / 0 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.006G086500 [exp] 495 / 3e-167 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 60 / 5e-09 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 57 / 4e-08 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 54 / 3e-07 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.013G154500 [exp] 50 / 6e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016527 [exp] 598 / 0 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 598 / 0 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10002704 [exp] 470 / 3e-157 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 468 / 2e-156 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 460 / 4e-153 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 411 / 1e-134 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 360 / 8e-115 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 338 / 1e-106 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 57 / 2e-09 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 57 / 3e-08 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G032000.1 pacid=42772127 polypeptide=Potri.009G032000.1.p locus=Potri.009G032000 ID=Potri.009G032000.1.v4.1 annot-version=v4.1 ATGGTGTTGCAGAAGAGATTAGATTACGGATTCAATGGCTATCAGGTTCCTCCCATTCCCCGAGCTACCAGATCAGCTAGGAGGAGGGGTTCCTTTAAGA AGAAACATGAAGAGAATCAGATGTGTGCATTTGACTTATTAGCCATTGTAGCTGGAAAGTTATTGCTTGATAAAGAAAGTGCTCCCAGTTCTAGTGATAC ATCAGCGGACGAAGATCAGCGTGCAGTTATTAATAGTGCTGTAAAAAATGAATGGCAGGATGAAGAAAAATCTTTGAAAGTAGAAGCTTGCGATCAGGGA AGTGCTGACAAGAACATCTATGTTTCTGATCTATCACATGTTCATCGACAAGGTTGCAGTTCCAAAGAATCTCTGGTCACCGAGAATGGCCTTAATTTAG GATTAGCTTCTGCACTAGCAAAGCCTGATTGTGAAGAGAGGTCCAATGCTGAGAAGTTTGGGAATGGCCAAAGCAAGAGTGAAATAGGAACTTTTGCCAG CAAAGTAGAGGGAGGTTCCTCTGAGTACATAGAATTTGGTGACTGTAAATTAGAGGCTGAAACTAAAAGAGCAGTGAAAGATGAGCCTCATAAGTCTGGG ATGGTGCAAAGTAGCACTGTGGCCAATATATGCAATTTAGAGGACCCTGTGGTCCTGGATGCAAAACCTCCTGCACTAGTCAGTTCAGATAGTAGTGCCA AGGTGCCTCTCTGTGGGAACCCCAATAGTTCTTATCCCACAAATCAGGATGATGTAAATGTAGTTAGTAGAGATGATGACGAAAACTCCTCTGGGTGTAC TCACCCTATCACCACAAAAAAGTTCTTTAGGCCAGCACCACGGATTGGAGATCGAAGAATAAGGAAAATTTTGGCTTCTAAATATTGGAAAGTAGCTCCA AGGTTGAAGGATGCGACAGTTTCTAACTCTGATAGGGATTTGAAGCCTGTTTTCCGCAAGAGGCAGAACTGTTACAGACATCGAAGGTCTGAAAGGATAT ATCCTTTCAAAAAGAGGAAGCACTTTGCCTATAGTTCACCATCAAATTCTGATGGAGGAATGAGTTGTGAGTTTGTTTCTGATTCATCTCAAAAGGGCAG CAATGAAGATGCTTCCGTCTCCTGTTCAAGAATGCGTGGAGCCACCGGGACATCATCTTCTTTTGCAGGTCAACACACTTCATTCCTACCTAGGGATTCT CATGTGAAGCTCAGGATCAAGTCTTTCAGTGTGCCAGAGCTTCTTATTGAGATTCCAGAAAGTTCAACTGTTGGTTCATTGAAGAGGACTGTCATGGAGG CCGTGACTGCTATACTTGGTAGTGGATTACGTGTTGGTGTACTTCTTCAAGGAAAGAAGGTTAGGGAGGACAATAAAACTTTACAGCAGACTGGGATTTC TCGCAATAACCAGTTGGATGCTTTGGGTTTTTGCTTGGAGCCTAATCCTTCACAAATCCCCCCTTCTCTGTGCCCTGGAGATTCTCCCTTTTTTCTTCAA TGTGACACACCACAGCCTATACTCAGGTATCCTCACACTACCGGTGTGGTACATCAGGGCATTTGTGCTGTTCCTGAGCCTCATGCGAACAATTTAGGGA ATTATATTGAGAGTGACCATGACTCAGCACCCTCTCCTACTGACACTTCAATGGACAAAAGCACTAATTCAAAAGCGCTGGTTGCAGTACCAGCAATGAA TGTAGAGGCGCTAGCTGTGGTTCCGGCACTTCGGAAATCCAAACGATCTGAGATTGCTCAGCGCCGAATTCGTCGACCTTTCTCTGTTACTGAAGTTGAA GCATTGGTTCATGCAGTTGAGAAACTTGGAACGGGAAGATGGCGTGATGTTAAACTGCGAGCCTTTGATAATGCAAAGCATCGGACATATGTGGATTTGA AGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCTCCTCAGCAAAGGAGGGGAGAGCCTGTCCCCCAGGAGCTCTTAGACAGGGTCTTAGCTGC GCATGCTTACTGGTCCCAGCAGCAAGCCAAGCAACAGTTCAAACACCAGCAGGCAGAGACTTGCCTTCTCCTCTGA
AA sequence Show only first row Show all	>Potri.009G032000.1 pacid=42772127 polypeptide=Potri.009G032000.1.p locus=Potri.009G032000 ID=Potri.009G032000.1.v4.1 annot-version=v4.1 MVLQKRLDYGFNGYQVPPIPRATRSARRRGSFKKKHEENQMCAFDLLAIVAGKLLLDKESAPSSSDTSADEDQRAVINSAVKNEWQDEEKSLKVEACDQG SADKNIYVSDLSHVHRQGCSSKESLVTENGLNLGLASALAKPDCEERSNAEKFGNGQSKSEIGTFASKVEGGSSEYIEFGDCKLEAETKRAVKDEPHKSG MVQSSTVANICNLEDPVVLDAKPPALVSSDSSAKVPLCGNPNSSYPTNQDDVNVVSRDDDENSSGCTHPITTKKFFRPAPRIGDRRIRKILASKYWKVAP RLKDATVSNSDRDLKPVFRKRQNCYRHRRSERIYPFKKRKHFAYSSPSNSDGGMSCEFVSDSSQKGSNEDASVSCSRMRGATGTSSSFAGQHTSFLPRDS HVKLRIKSFSVPELLIEIPESSTVGSLKRTVMEAVTAILGSGLRVGVLLQGKKVREDNKTLQQTGISRNNQLDALGFCLEPNPSQIPPSLCPGDSPFFLQ CDTPQPILRYPHTTGVVHQGICAVPEPHANNLGNYIESDHDSAPSPTDTSMDKSTNSKALVAVPAMNVEALAVVPALRKSKRSEIAQRRIRRPFSVTEVE ALVHAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQAKQQFKHQQAETCLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.009G032000 [exp]	0	1
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Potri.004G163800 [exp]	4.89	0.8269
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	7.34	0.8724	Pt-COL11.2
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Potri.001G017300 [exp]	8.94	0.8355
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.010G129532 [exp]	11.18	0.8526
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	14.83	0.8631
AT3G14760			unknown protein		Potri.011G103500 [exp]	20.97	0.8290
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034800 [exp]	22.20	0.8103
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	22.49	0.7966
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.007G017800 [exp]	23.36	0.8193
					Potri.002G153750 [exp]	24.45	0.7743

Compare expression of checked genes

Potri.009G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.