Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59400 342 / 1e-118 unknown protein AT4G11960 80 / 5e-17 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT4G22890 79 / 2e-16 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241400 [exp] 526 / 0 AT5G59400 357 / 2e-124 unknown protein Potri.003G119200 [exp] 79 / 1e-16 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 74 / 4e-15 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040799 [exp] 378 / 1e-132 AT5G59400 316 / 3e-108 unknown protein Lus10016531 [exp] 375 / 1e-131 AT5G59400 311 / 2e-106 unknown protein Lus10014135 [exp] 79 / 2e-16 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10006710 [exp] 75 / 3e-15 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G032300.3 pacid=42772473 polypeptide=Potri.009G032300.3.p locus=Potri.009G032300 ID=Potri.009G032300.3.v4.1 annot-version=v4.1 ATGGCAGGCACGTGCACATACATCTCTCGTCACGTGATCGAACTGTCATCCTACAACAGAGCTAGCAGGTCTGGGAGAGAGGGTGCTTCATTTTGTTGGG CTCGCCTCTCTGCGATGAGTAGCAATGGAGTGTCAAGAACGCGTAAGGTTGCACTTGCACCGGAAGGACCGTCTTGCTTATTCGTTGGCCCAATAGAGAC TGCAAGCCAAGAAACTCTCGAAGCTCTCTATCGTCAAGCACGAGATGCATATTACAGTGGTAAACCTTTGATAATAGATGACATGTTTGATAGAGTTGAG TTAAAATTGCGGTGTTATGGTTCCAAATGTGTTGTCAAGTACCCTCGCTGCAGTATTAGACGACAGTCAACATACTCTGATGCTGAGGCAGATATATCAC AGGCGTTTGCACTAGCAAGTATTTGGATCCTGTTTCTTACAGTTGGCTGTTCAGCGTGCGCTCTGCCTATAATCTACACAATTGGCCTGGCTTACCAAGA TGCATTTGGCTCGGTAATATCCCATGGCAGCCAGACGCCTATTATTGGGTTTCTTGCTACTGTTAATGGTATTCTCTTTATGGCAGTGAGTGCTTTGATT GGCTATCCAATTGCATCTGCTTCGGTGAAGGTGCTGCAAGGTCTATGGAGGAATGACTTGGTGGCACTCAAGGGAGCATGCCCAAATTGTGGCGAGGAGG TATTTGCCTTTGTGAAATCAGATCAATCTAACAACTCCACACATCGAGCAGATTGTCATGTATGTGAAAGTTTACTAGAATTCCGCACCGAGGTTGAGCA AACCATTTCAAGAGTAGGTAGACGGTGGGTGTTTGGGCGCATATACCTTGTATCTCGAAGACATCAGAGATTGAAGTAA
AA sequence Show only first row Show all	>Potri.009G032300.3 pacid=42772473 polypeptide=Potri.009G032300.3.p locus=Potri.009G032300 ID=Potri.009G032300.3.v4.1 annot-version=v4.1 MAGTCTYISRHVIELSSYNRASRSGREGASFCWARLSAMSSNGVSRTRKVALAPEGPSCLFVGPIETASQETLEALYRQARDAYYSGKPLIIDDMFDRVE LKLRCYGSKCVVKYPRCSIRRQSTYSDAEADISQAFALASIWILFLTVGCSACALPIIYTIGLAYQDAFGSVISHGSQTPIIGFLATVNGILFMAVSALI GYPIASASVKVLQGLWRNDLVALKGACPNCGEEVFAFVKSDQSNNSTHRADCHVCESLLEFRTEVEQTISRVGRRWVFGRIYLVSRRHQRLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59400			unknown protein		Potri.009G032300 [exp]	0	1
AT3G26085			CAAX amino terminal protease f...		Potri.008G181400 [exp]	7.93	0.8391
AT1G22180			Sec14p-like phosphatidylinosit...		Potri.013G068700 [exp]	20.19	0.7701
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.007G006600 [exp]	20.83	0.7918
AT3G09085			Protein of unknown function (D...		Potri.004G103400 [exp]	22.49	0.7478
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.014G159300 [exp]	24.53	0.7758	COP1.1
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.018G123700 [exp]	25.29	0.8133
					Potri.015G008200 [exp]	30.85	0.7401
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	44.19	0.7603
AT5G27830			unknown protein		Potri.013G014800 [exp]	44.74	0.7079
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	47.32	0.7609

Compare expression of checked genes

Potri.009G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.