Plant FIBer expression Database

Potri.009G033700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59500 439 / 1e-153 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G242400
[exp]
677 / 0 AT5G59500 451 / 4e-158 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Potri.007G074500
[exp]
45 / 3e-05 AT5G08335 298 / 4e-104 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001571
[exp]
435 / 9e-152 AT5G59500 410 / 3e-142 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Lus10004974
[exp]
405 / 4e-140 AT5G59500 402 / 6e-139 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF04191 PEMT Phospholipid methyltransferase
Representative CDS sequence
>Potri.009G033700.1 pacid=42772644 polypeptide=Potri.009G033700.1.p locus=Potri.009G033700 ID=Potri.009G033700.1.v4.1 annot-version=v4.1
ATGGAAACTACATCAGTTCTCCTTCACTCTAAAACAATTCCATTCAGTTTCACTATTTCCATCAACAACAGAAAAAGAAAACTCTCTTTCCGGCATCACA
ACAAACACCTTCAATCCCATTTATCAAATACCAGTGTACTCTCTGGTCAAAACCTTAAACCCATAAAAAACCCATTAAACCCTCCTTTTTCATTGTATCT
ATCAACTTCATCTCTGAAAATAACGGGAACCCACTTGTTATCTCCTCCCAAATGCTCATATTCCGGCGCTGTAAGCACAGAGGGGCTTCAGACCCACCAA
TTTTTAAAACCCTTAAAAAACCTCTCTCTTGAGAAACTGAAAGCTACCCTTTTGCAATTAACCCCTGTTGACATCATCAAGTGGTCTGCTATCTTATCGG
CTGCAATTGCTGCCACAAAATGGACTGTGAATTTGGTAATTAACCCGTTTTTCTGGATGTATTTTAGCTGGACATGGTTGTTTTGGCCATGGTTTGTGGC
TATATCACTTGCTGTTTATGGGTTATACTGCTTCTATAAGCATTCAATCGGTGAAGCTAGCATTTTTGAGCAACTTGCAATTGTTACATCAGTGTTCACT
TGGTTAACTCTAGTCCCTCCTGCCCATTTCAGTGGATATCTACAAGGATGGCCTTTTGTGTTCTTTTTGGTGTATCATTATTTCTTCTTCTTCAATGTAA
GTGTGAGGAAACGTTTGTATGGGGATTATTATGCACGTCCGCACGACCCCAAGTGGGATTTAAACCCACCCAGATGGTGTCGCCTTTTGTTCTGTGTTGG
GGTCATGGCTGGGCACTGGCTTGCAGCTTTTGAAGGGCCAGAGCTGCACCTTATTCCTGGTGGGTGGATCAATGTGGGGATTTGGATTTTGATATTGGCA
ACTTTGCTAATGCAATATAATTCTACATTTTACCTTGCTAAGTATTCAGAGAAGGTGGTGGTGCCTTCTGCTGTTGTGCAGTTTGGGCCATATAGGTGGG
TCCGGCACCCTATCTATTCGTCCACATTGCTTCTCTTTGTGACTTATTTCATTGCGCTTCGTGCACCTTTGAGCCTGTTGTTTGTGGTAGCGGTATGTTT
GATGTATTATGCACAGAAGGCAAAAATGGAGGAGGGTTTAATGATTGAGACTTTCGGGGAGAAGTATCTAGAGTACATGAGTAAAGTTCAGTACAAGTTC
ATTCCTTTGGTTTATTAG
AA sequence
>Potri.009G033700.1 pacid=42772644 polypeptide=Potri.009G033700.1.p locus=Potri.009G033700 ID=Potri.009G033700.1.v4.1 annot-version=v4.1
METTSVLLHSKTIPFSFTISINNRKRKLSFRHHNKHLQSHLSNTSVLSGQNLKPIKNPLNPPFSLYLSTSSLKITGTHLLSPPKCSYSGAVSTEGLQTHQ
FLKPLKNLSLEKLKATLLQLTPVDIIKWSAILSAAIAATKWTVNLVINPFFWMYFSWTWLFWPWFVAISLAVYGLYCFYKHSIGEASIFEQLAIVTSVFT
WLTLVPPAHFSGYLQGWPFVFFLVYHYFFFFNVSVRKRLYGDYYARPHDPKWDLNPPRWCRLLFCVGVMAGHWLAAFEGPELHLIPGGWINVGIWILILA
TLLMQYNSTFYLAKYSEKVVVPSAVVQFGPYRWVRHPIYSSTLLLFVTYFIALRAPLSLLFVVAVCLMYYAQKAKMEEGLMIETFGEKYLEYMSKVQYKF
IPLVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59500 protein C-terminal S-isoprenyl... Potri.009G033700
[exp]
0 1
AT1G09830 Glycinamide ribonucleotide (GA... Potri.004G225500
[exp]
1.73 0.9595
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.008G017900
[exp]
5.83 0.9309
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.007G009500
[exp]
6.00 0.9419
AT1G32580 plastid developmental protein ... Potri.008G169900
[exp]
7.74 0.9535
AT4G24770 CP31, ATRBP33, ... ARABIDOPSIS THALIANA RNA BINDI... Potri.015G086500
[exp]
8.94 0.9586 CTRNP.1
AT1G10522 unknown protein Potri.010G094900
[exp]
11.83 0.9476
AT1G26740 Ribosomal L32p protein family ... Potri.008G090100
[exp]
11.83 0.9221
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
12.00 0.9466
AT1G02140 MAGO, HAP1, MEE... MATERNAL EFFECT EMBRYO ARREST ... Potri.002G138500
[exp]
12.96 0.9286
AT3G58830 haloacid dehalogenase (HAD) su... Potri.002G060600
[exp]
13.30 0.9554

Potri.009G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.