Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59520 355 / 4e-122 ZIP2 ZRT/IRT-like protein 2 (.1) AT1G55910 342 / 2e-117 ZIP11 zinc transporter 11 precursor (.1) AT4G19690 74 / 2e-14 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 71 / 1e-13 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G32270 69 / 6e-13 ZIP3 zinc transporter 3 precursor (.1) AT1G31260 69 / 6e-13 ZIP10 zinc transporter 10 precursor (.1) AT2G04032 66 / 5e-12 ZIP7 zinc transporter 7 precursor (.1) AT3G12750 66 / 6e-12 ZIP1 zinc transporter 1 precursor (.1) AT4G33020 60 / 8e-10 ATZIP9, ZIP9 ZIP metal ion transporter family (.1) AT2G30080 59 / 2e-09 ATZIP6, ZIP6 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366100 [exp] 371 / 1e-128 AT1G55910 381 / 1e-132 zinc transporter 11 precursor (.1) Potri.001G366200 [exp] 357 / 1e-122 AT1G55910 379 / 1e-131 zinc transporter 11 precursor (.1) Potri.015G117900 [exp] 77 / 1e-15 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 72 / 6e-14 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.006G006800 [exp] 71 / 1e-13 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 68 / 2e-12 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.001G279300 [exp] 67 / 4e-12 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.010G134300 [exp] 66 / 6e-12 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.009G074100 [exp] 63 / 5e-11 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016609 [exp] 380 / 2e-132 AT1G55910 406 / 8e-143 zinc transporter 11 precursor (.1) Lus10004413 [exp] 377 / 3e-131 AT1G55910 412 / 4e-145 zinc transporter 11 precursor (.1) Lus10014062 [exp] 70 / 4e-13 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 65 / 1e-11 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10006935 [exp] 65 / 2e-11 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10031307 [exp] 53 / 3e-08 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10014063 [exp] 54 / 5e-08 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031872 [exp] 42 / 0.0003 AT2G30080 157 / 6e-47 ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.009G034600.1 pacid=42771538 polypeptide=Potri.009G034600.1.p locus=Potri.009G034600 ID=Potri.009G034600.1.v4.1 annot-version=v4.1 ATGGCTAAATATTTCATGCCTTGTTTGAAAACTCCCAAGTCAACCTCTCTGTTGATCTCTCTGATATTGATCCTGCAATTCTCTTTAATCAGTAGCCACG GAGGTCATGATGGAAACGACAGCAGCGAGGGTAACGTACATTTGCATTCGAAAAGCTTGATTCTGGTGAAAGTATGGTGTTTGATCATACTGCTAGTTAC CACATTCGCAGGTGGTATCTCTCCCTACTTCTATCGATGGAACGAGAATTTCCTTCTCTTGGGCACACAATTTGCCGGCGGGGTTTTTCTAGGGACCTCT CTCATGCATTTCTTGAGCGATTCGGCTGATACTCTTAGCAATCTCACTACCAAGACATACCCTTTCTCGTTCATGCTAGCCTCTGCTGGCTATCTTTTAA CCATGCTTGGTGATTGCATAGTGATGTTCGTAACAAGGTCAGGTGCTGAAAGAGAAGCTAGAGTGCAAGTGGATGAAGGAGTGGTAGCTCAAGAGGATGA TAAAGATGTGGCCATGAATGCCGATCCCATTTTCTTGAAGACCACGTCTCTTGGGGACACCATACTACTCATCCTTGCCTTGTGTTTTCATTCAGTTTTT GAGGGAATAGCCGTTGGAGTTGCAGGGACTAAGGGAGAGGCATGGAGGAATCTTTGGACTATATCATTGCACAAAATCTTTGCAGCCATTGGAATGGGAA TCGCTCTGCTTAGGATGCTCCCGAAGAGGCCATTTCTATTAACCGCGGCATATTCTTTTGCTTTTGCTATTTCCAGCCCCCTTGGAGTAGGGATAGGCAT TGCCATTGATGCCACTGCTCAGGGCCAAGAAGCTGATTGGATCTTTGGTATCTCTATGGGGCTTGCATGTGGAGTTTTTATCTATGTTGCCATCAACCAT CTCATAGCTAAAGGATTCCATCCACAAGCTAAATTGTACTTCGACACTCCATTCTTCAAGTTTGTTGCTGTGTTCCTTGGGGTGGGAGTTATTGCAGTTG TTATGATTTGGGATTGA
AA sequence Show only first row Show all	>Potri.009G034600.1 pacid=42771538 polypeptide=Potri.009G034600.1.p locus=Potri.009G034600 ID=Potri.009G034600.1.v4.1 annot-version=v4.1 MAKYFMPCLKTPKSTSLLISLILILQFSLISSHGGHDGNDSSEGNVHLHSKSLILVKVWCLIILLVTTFAGGISPYFYRWNENFLLLGTQFAGGVFLGTS LMHFLSDSADTLSNLTTKTYPFSFMLASAGYLLTMLGDCIVMFVTRSGAEREARVQVDEGVVAQEDDKDVAMNADPIFLKTTSLGDTILLILALCFHSVF EGIAVGVAGTKGEAWRNLWTISLHKIFAAIGMGIALLRMLPKRPFLLTAAYSFAFAISSPLGVGIGIAIDATAQGQEADWIFGISMGLACGVFIYVAINH LIAKGFHPQAKLYFDTPFFKFVAVFLGVGVIAVVMIWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59520		ZIP2	ZRT/IRT-like protein 2 (.1)		Potri.009G034600 [exp]	0	1
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.012G001600 [exp]	1.00	0.8138
AT5G42567			Protein of unknown function (D...		Potri.018G045250 [exp]	4.69	0.7920
AT1G19230			Riboflavin synthase-like super...		Potri.006G137300 [exp]	18.43	0.6373
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.010G247600 [exp]	25.33	0.7386
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G365300 [exp]	25.41	0.6606
AT4G20820			FAD-binding Berberine family p...		Potri.001G461700 [exp]	26.72	0.6734
AT4G20820			FAD-binding Berberine family p...		Potri.001G461900 [exp]	31.46	0.6512
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	34.20	0.6943
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.001G365366 [exp]	41.47	0.6372
AT5G01720			RNI-like superfamily protein (...		Potri.019G123400 [exp]	43.49	0.6063

Compare expression of checked genes

Potri.009G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.