Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55530 333 / 1e-115 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G04790 76 / 2e-15 RING/U-box superfamily protein (.1) AT3G58720 70 / 7e-14 RING/U-box superfamily protein (.1.2) AT4G32600 69 / 5e-13 RING/U-box superfamily protein (.1) AT1G80400 67 / 2e-12 RING/U-box superfamily protein (.1) AT1G49850 64 / 7e-12 RING/U-box superfamily protein (.1) AT5G56340 65 / 1e-11 ATCRT1 RING/U-box superfamily protein (.1) AT5G66070 63 / 1e-11 RING/U-box superfamily protein (.1.2) AT2G17730 62 / 2e-11 NIP2 NEP-interacting protein 2 (.1.2) AT5G66160 63 / 3e-11 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201500 [exp] 332 / 3e-115 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.003G176500 [exp] 74 / 1e-14 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 63 / 4e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 66 / 5e-12 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 65 / 6e-12 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.019G032500 [exp] 65 / 7e-12 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 63 / 1e-11 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 64 / 2e-11 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 62 / 2e-11 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004977 [exp] 363 / 2e-127 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 353 / 2e-123 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10000513 [exp] 308 / 2e-105 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10002706 [exp] 300 / 2e-102 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10023671 [exp] 72 / 7e-14 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10020258 [exp] 67 / 2e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 66 / 6e-12 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10013144 [exp] 66 / 6e-12 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10028406 [exp] 64 / 6e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 64 / 6e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G034700.7 pacid=42771778 polypeptide=Potri.009G034700.7.p locus=Potri.009G034700 ID=Potri.009G034700.7.v4.1 annot-version=v4.1 ATGAGTTTTGTGTTTCGAGGCTCGAGAGGAGATATTGAAAGTGGATTTTCAGGCTTCATTCCTGAAAGACCTGCAGTGCGTATTCATGCAGCTCGACCAG TTAACTCCAATTCACTTGCTTTTCTTGTCACGGCAGTTCTTTTGCTGTTCATGATTTTAAACTCTCATCAGATGTCACCAAACTTCCTGCTTTGGCTGGT TGTGGGTGTCTTTTTGATGGCCACAAGCTTGAGAATGTATGCAACTTGTCAACAACTTCAAGCTCAGGCACGAGCTCATGCTGCAGCAGCCAGTGGCTTG ATGGGTCACACTGAACTGCGTTTGCATATGCCGCCATCAATAGCTTTTGCAACAAGAGGACGGTTGCAGGGACTAAGGCTCCAGCTTGCTCTTCTTGACC GTGAATTTGATGACTTAGATTATGATACTCTTAGAGCACTGGACTCTGGTAATGCTTCTACTACCTCAATGACCGAGGAAGAGATAAATGCCTTGCCAGT TCACAAGTATAAGGTCCCTGTTCAGGAGAATACTAGTGCATCTCTGCAGCATGCTTCATCTTCTTCAGCTCCAGCTGAGACAAAGCAAGACTCGAAAAAT GCAGATGGGAACATGAAAACTTCAGAAGATGAATTGACTTGCACTATTTGTTTGGAGCAAGTTAACAGGGGGGAACTAGTTCGTAGCTTGCCATGTTTGC ACCAGTTTCATACCAACTGTATCGATCCATGGCTGCGGCAACAAGGCACGTGCCCAGTGTGTAAATTTCTGATCGGTTCCGGATGGCAAGAAAGCAGAGA GAGTGAATCTGATGGGTCGGACATGGTTTAA
AA sequence Show only first row Show all	>Potri.009G034700.7 pacid=42771778 polypeptide=Potri.009G034700.7.p locus=Potri.009G034700 ID=Potri.009G034700.7.v4.1 annot-version=v4.1 MSFVFRGSRGDIESGFSGFIPERPAVRIHAARPVNSNSLAFLVTAVLLLFMILNSHQMSPNFLLWLVVGVFLMATSLRMYATCQQLQAQARAHAAAASGL MGHTELRLHMPPSIAFATRGRLQGLRLQLALLDREFDDLDYDTLRALDSGNASTTSMTEEEINALPVHKYKVPVQENTSASLQHASSSSAPAETKQDSKN ADGNMKTSEDELTCTICLEQVNRGELVRSLPCLHQFHTNCIDPWLRQQGTCPVCKFLIGSGWQESRESESDGSDMV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	0	1
					Potri.019G009900 [exp]	1.73	0.8992
					Potri.010G116200 [exp]	2.23	0.8634
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	2.82	0.8950
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.007G134500 [exp]	4.00	0.8574	MYB.43
AT5G01350			unknown protein		Potri.006G101901 [exp]	5.65	0.8736
AT3G59390			unknown protein		Potri.019G051300 [exp]	6.70	0.8352
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Potri.014G094300 [exp]	12.16	0.8059	RRP41.1
AT5G22400			Rho GTPase activating protein ...		Potri.016G078200 [exp]	12.72	0.7892
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	14.49	0.8542
AT5G43150			unknown protein		Potri.008G152200 [exp]	16.52	0.8417

Compare expression of checked genes

Potri.009G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.