Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 397 / 7e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 387 / 9e-125 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 356 / 7e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 346 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 350 / 1e-109 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 345 / 3e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 340 / 6e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 340 / 1e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 342 / 6e-107 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 343 / 1e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 391 / 9e-124 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 382 / 9e-123 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 385 / 2e-122 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 379 / 3e-121 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 378 / 1e-120 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 370 / 4e-118 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 363 / 2e-116 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 360 / 2e-115 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 356 / 3e-115 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040997 [exp] 743 / 0 AT4G13650 370 / 8e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016509 [exp] 714 / 0 AT1G11290 361 / 1e-114 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040776 [exp] 572 / 0 AT1G11290 272 / 7e-82 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 396 / 8e-128 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 400 / 3e-127 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 359 / 3e-114 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 357 / 4e-112 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 351 / 6e-111 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 352 / 9e-110 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 345 / 1e-109 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G035100.1 pacid=42772056 polypeptide=Potri.009G035100.1.p locus=Potri.009G035100 ID=Potri.009G035100.1.v4.1 annot-version=v4.1 ATGAGCTTGTGTTCTTCCGCTTCTCCCCTACGGAAACTGAAAGTATCCAAATCCGCCAACCACCTGCTTTCCCGCGCTTTAACAAGCCACAACCACCATG AGGAACACAGTAGCAGCCGCACCTTCAACAGCAACCAGAACACATCAAGCCCAGTTGATTCTGATCTCATTGCTGAATTCACGCGACATGGCTCTCTATC TAATCCTTACTTTCTCAACAAAATCGTTTCCTTTTGTGCCAAATCCGGTTCTTTCCATTTGGGAATTCAAGCCCACTCAACTATTCTCAAATTGGGTTTT ATTTCAAACGTGTATATTTGTAGTGCTGTTGTTGATATGTATGCAAAATGCGGCGAAATTTCAAGTGCACGAGTATTGTTTGATCAAATGCCTCAAAGAA CTGTTGTTACGTGGAATTCGTTGATTTACGGGTATTTGGCTGTCAATTGTCCGAAAATAGCTATTGAATTGTTTATCAAGATGTTAAAAGCTGCTATAAA TGTGTCAGCGTTTAGTGTTTCGAGTTGTCTGGCAGGTTGCTCGCAATTAGAGGCCAGAGAAGTCGGGACTCAGGTTCATGGGCTAATTTTGAAAACTGGA TTGGGTTATAATGTTGTTGTGGGAACGAGCTTGGTTGATATGTACTCAAAGTGTGGCGATGTTGATGATTCCAGGCTGGTTTTTGATCATATGGTGAATA GGAATGTAATTACTTGGACTTCTATGGTTACTGGGTATTCACAGATTGAAAAACCTGATGAAGCAATGGCTTTGGTTAAAGAAATGGTGCTTCAGGATCT CAGGCCAAATTGTGTAACCTATAACAGCTTGCTAAGTTCATTTTCTGGTCCTGATTGTTTAAGTTATTGCTTGCAAGTTCATTGTTGTATAATTCAATTA GGTTTAGAGTCTAATGTGTATATAGCAGCTACACTGGTCACCGTGTATTCAAAATGTAGTAGTAGTTTAGAGGACTTCAAGAAGGTGTGCTCAGTTGTTA TGACATGTGACAATATAGCTTGGAATGCAGTCATTGCTGGTTACTCAAAATTAGGGCGTCATGAGGAAGCTCTCAGATGTTTCCATGAAATGAAGCAGGC TGGTATTGATATAGACTCTTACACGTTAACAAGCGTGGTAGGAGCAATTGGGAATAGTTCATTTCTTGAAGAGGGAAAGGCAATGCATGCTCTCATTCAC AGAACTGGCTATATTTCACACTTGAATGTTCAAAACGGGCTTGTTTCCATGTATGCGAGATGTGGAGCCATCGGTGATTCGAAGAGAGTCTTTTGGTTCA TGGAGGAACATGATGTGATCTCATGGAATGCACTTCTAACAGCATTTGCTCATCATGGATATGGCAGAGAGGCTGTGGAATTGTTTGAACAAATGAGAAA AACTGAAATCAAGCCGAATAGTTCTACCTTCCTAGCTGTGCTGTGTGCTTGTAGCCATGTTGGTTTTGTGGATAAGGGAATTGAGTATTTTGACACGATG AAAAGTGATATTTTGCTAGAACCCCTTAAAGTAGAGCATTATGCCAGTCTTGTAGATACTTTTGGTCGAGCTGGGTATCTTAATGAGGCGGAAGCCTTCA TTAATAGCATGCCTATAGTACCAGCGCCCTCAGTCTATAAAGCTCTTCTTAGTGCTAGTCTGGTTCATGGAAATAGAGAGATTGCTGCACGTTCTGCAAA AAAGCTTCTAGAGCTCTGGCCTAATGATCCAGCGACATATGTACTGCTATCCAGTGTATTGACTGTGGACGGTAATTGGGACGATGCAGCAGATTTACGG AAACTGATGTGTGATAGAGGGCTAAGGAAGAAGCCTGGTTATAGTTGGACTTGA
AA sequence Show only first row Show all	>Potri.009G035100.1 pacid=42772056 polypeptide=Potri.009G035100.1.p locus=Potri.009G035100 ID=Potri.009G035100.1.v4.1 annot-version=v4.1 MSLCSSASPLRKLKVSKSANHLLSRALTSHNHHEEHSSSRTFNSNQNTSSPVDSDLIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGF ISNVYICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTG LGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQL GLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIH RTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHVGFVDKGIEYFDTM KSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLTVDGNWDDAADLR KLMCDRGLRKKPGYSWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	1.41	0.9313
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	2.00	0.9161
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	2.82	0.9034
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	3.46	0.9142
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	4.12	0.8767
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	4.24	0.8993
					Potri.018G133300 [exp]	4.47	0.8843
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	5.00	0.9025
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	9.27	0.8517
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	9.79	0.8797

Compare expression of checked genes

Potri.009G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.