Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46750 170 / 1e-48 unknown protein AT4G25580 45 / 7e-05 CAP160 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243900 [exp] 332 / 9e-111 AT3G46750 99 / 2e-22 unknown protein Potri.015G143950 [exp] 50 / 1e-06 AT5G52300 92 / 1e-19 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2) Potri.012G141300 [exp] 46 / 3e-05 AT5G52300 164 / 2e-43 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004979 [exp] 148 / 2e-39 AT3G46750 57 / 1e-08 unknown protein Lus10001565 [exp] 98 / 4e-23 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G035300.3 pacid=42772598 polypeptide=Potri.009G035300.3.p locus=Potri.009G035300 ID=Potri.009G035300.3.v4.1 annot-version=v4.1 ATGACATGCGGCTCTTGTTCACTGCCTGTGCAAGAACTCCGGGAAAGAGATGCTTGGGCATCCCCCGTTCTCTTAAATTTCCCTCTATGTAATAAGAGAT GCAGAAAAAAGGATGGACATTTGGGGAGAAACGCAACGCTGAAGGAAATGATGGCACACCCTCAATCACGTACTGGAGCAATGGCTCCAATTGCTGTCAG GCACAGACATGGTAACGGCCCTAGAACTCCAACCAGCCCAACCGTGGAAGAACTTCTACGAGCTGAGGAAGTATCTAGGTGGTCACCACACTCCTCACCA ACTTTTTGGAAGGACCATGACCTGGAGTATGATCAATCCCCCAATCACAAGAAATCAGTTATTGCTAAAGTGAAGGAGAGGGCCAAGAAATGGCGAAGCA ATCTCATCAAAAAGAAGCATAGTGATGACAGTAACACCACTCCTCCATGGGGTGTTAGCCTGGATGATGATGAAGCTGAAGAAGATCCTGAATATCTTGG AGCGCCAATGTACGAATCAGAGATGGCTCCTGAGGGGTACAAGGAGGCAGCTAGACAGCATCCAAGAGCAGTTCCTGTGATACCAGAGAAGCATGTTTTG CCAAGTAGCGTGACCTGTGCTGCTGAAGACAAGCCAGTAACTGAAACCGTGAACGGGAAACAAGAAAATGAGAACTTTTCCAAGACATTATCCGAAATTA TGGCAGAGAAGCTGGCACCAGCATATGCCACAGTATCTGATGCCACCCATGCCATAACTTCCAAGATTCAAAGCCTTGAAATTTCAACCCCTGAAGCATC AGATGCAACAGGATTAGACCCCGCGGGCAAAGGCAAAGCATCATCATCTGTAGCAGTACCAACCAAAGTAGCACCAGACCAAGTTGCATCAGATCCAGCC CGAGCCCCGACAGATGCAGCATCTGGTTACCATTTCAGAACCGGGGAGCAAAAATGGGATAAAGGAGTTTCAGTGAAGGAGTATATAATCCACAAATTTG AGCCAGGAGAAGATGACAGAGCACTTTCTCAAGTGATATCTCAAGCAATAAGTCCAAGAAAAGCTGCTGGTAATGTGAGTATGGTGGATAAGGTGAAAGA TGCTGTCAACTCTCTTCTTCGGGGCTCGGAGTCCTCCCAACCTACAGTTTACCATTCAGCTAAGAACTCATCCTCAAATATCCCCATCTCAATCGATGCT CATGAAGTTACTGAAGAAGAAAATCATGGAAGGATACTTCAAGCCAACTGA
AA sequence Show only first row Show all	>Potri.009G035300.3 pacid=42772598 polypeptide=Potri.009G035300.3.p locus=Potri.009G035300 ID=Potri.009G035300.3.v4.1 annot-version=v4.1 MTCGSCSLPVQELRERDAWASPVLLNFPLCNKRCRKKDGHLGRNATLKEMMAHPQSRTGAMAPIAVRHRHGNGPRTPTSPTVEELLRAEEVSRWSPHSSP TFWKDHDLEYDQSPNHKKSVIAKVKERAKKWRSNLIKKKHSDDSNTTPPWGVSLDDDEAEEDPEYLGAPMYESEMAPEGYKEAARQHPRAVPVIPEKHVL PSSVTCAAEDKPVTETVNGKQENENFSKTLSEIMAEKLAPAYATVSDATHAITSKIQSLEISTPEASDATGLDPAGKGKASSSVAVPTKVAPDQVASDPA RAPTDAASGYHFRTGEQKWDKGVSVKEYIIHKFEPGEDDRALSQVISQAISPRKAAGNVSMVDKVKDAVNSLLRGSESSQPTVYHSAKNSSSNIPISIDA HEVTEEENHGRILQAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46750			unknown protein		Potri.009G035300 [exp]	0	1
AT2G25920			unknown protein		Potri.014G122900 [exp]	9.94	0.5503
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	10.39	0.6359
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	19.49	0.6039
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.005G005866 [exp]	45.60	0.5597
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.019G101950 [exp]	47.32	0.5216
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	58.58	0.5269
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Potri.004G130000 [exp]	100.68	0.5140
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	121.25	0.4705
AT2G26100			Galactosyltransferase family p...		Potri.006G228900 [exp]	123.22	0.4982
					Potri.008G129650 [exp]	144.41	0.4752

Compare expression of checked genes

Potri.009G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.