Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 628 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 622 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 617 / 0 RLK receptor lectin kinase (.1) AT5G60280 599 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 593 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 588 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 586 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT4G02410 586 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 585 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 585 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244000 [exp] 1051 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 957 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 888 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035601 [exp] 867 / 0 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 864 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 860 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 827 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035800 [exp] 765 / 0 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 682 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001564 [exp] 777 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 771 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 735 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 730 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 721 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 697 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 697 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 692 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 633 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 630 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.009G035400.1 pacid=42771956 polypeptide=Potri.009G035400.1.p locus=Potri.009G035400 ID=Potri.009G035400.1.v4.1 annot-version=v4.1 ATGGAAGCCTTACTTAGATCACTCCATTTTCTTCTAGCTCTTTTCATATCCTTAAAACACTTGGCTTTGGCTCAAGAGGTAAACCAATTCATCTACCATG GCTTCACGGGAGCCAACCTGAGTCTCAACGGGATTGCAAGTATTCACCCCAATGGCTTGTTGGAACTGACAAACACTTCAAAGCAGCAAATTGGTCATGC TTTCTTCCCATTTCCCTTCCATTTCAAATCATCTTTCCCCAACAATTCTAGGTCCCTTTCATTTTCTACGAACTTTGTGTTTGCCATGGTTCCCGAGACG CCTACGCGTGGTGGACATGGCATTGCGTTGGCTATTTCTCCATCTACAGAGTTCAAGGGTGCCACTGCCACTCAATATCTTGGTCTCTTTAATTCTACCA CAGTCGGTTTATCTTCAAATCACCTGCTTGCCATTGAGCTTGATGCTGTGAGAAGTCCTGAATTTCGAGATATCGGAGACAATCATGTTGGGATAGATGT CAACAATTTGACATCCATTCAATCTGCTCCAGCATCATACTTTTCAAAACATGAACGGGAAAATGAAAGCTTGCAGCTCATAAGTGGGGACCCAATGCAA GTGTGGATAGACTATGATGAAATGGAGAACCTACTCAACGTAACACTAGCTCCTGTAAGTATCATGAAACCTCAAAAGCCTCTCTTGTCAACACCTATTA ATCTCTCTCTAGTTGTTTTGGAGTCCATGTACGTTGGTTTCTCTTCATCCACTGGTTCTGTATCCAGTCATCACTATATTCTTGGATGGAGCTTCAACAA AAGCGGCCAAGCACAGAGCCTAGACACTTCAAAGCTCCCTTCACTTCCTCCTGAAAGAAATTCAACTAACAAACCATATTTACGAATTATGATCCCATTG ATAACAGTATCTGTTTTACTCATAGCAAGTTTTGCAACTATGTACATTATGAGGAAGAGATATGAAGAAGTACACGAAGATTGGGAGCAGCAATACGGTC CTCAAAGGTTTCGCTACAAGGATCTCTACAAAGCAACTAAAGGTTTCAAAGTCAAAGGACTCCTTGGATATGGAGGTTTTGGAAGGGTTTACAGAGGAGA ATTACGTTCTTCCAAGGTGGAAATTGCAGTCAAGAAAATCACTCATGATTCGAACCAGGGAATGAAGGAATTTGTAGCTGAAATTGCCACCATGGGGAGG CTAAGGCATAGGAACTTGGTACAGCTCTTAGGCTACTGTCGGCGGAAAGGAGAGCTTCTCTTGGTCTATGATTATATGCCTAACGGAAGCCTCGACAAGT TCCTATTTTGTAAAGTAAAACCAAACCTCAATTGGGCTCAGCGATATCAAATCATCAGGGGAGTAGCATCTGCCCTTCTTTACCTCCATGAAGAGTGGGA ACAGGTTGTTCTGCATAGAGATGTGAAAGCTAGCAATGTTCTATTAGATGCCGATCTTAACGGACGGCTAGGAGATTTTGGGCTTGCTAAGTTTCATGAC CATGGATCAACTCCCCAAACAACCAATGTGGTTGGAACAGTTGGATATCTTGCACCAGAGATTACTAGAACAGGAAAGTCAACTACCTGCAGCGATGTTT TTTCTTTTGGGACATTTATGCTCGAAGTAGCATGTGGAAGGAAGCCTGTAGAGTCAGAAAGACCACCTGAGGAGGTTGTTCTGGTTGACTGGGTACTTGA ATGCTGGAAGAGAGGTGCCATTCTTGGGACAGTTGATCCTAGATTTGAAGGTAACCACGTGGAGGAAGAAATGGAGTTGGTCTTAAAGCTAGGCCTGCTC TGTACACATCGCACTCCAGCAGCTAGACCTAGCATGAGGCAAGCGATGCAATATCTGGATGGAAATGCTACTTTACCTGATTTACCACTGCACGGTGCAG GAATCGGTTTAGTTCCAGTTAGCAATGAAGCATCTACAGAACATGTTTTAACAATCTGTATATCATCAGATGAAATTTCTTCCTATTCCTTGTCCGACTC TGAATCAATCCTCAGTGGTCGTTGA
AA sequence Show only first row Show all	>Potri.009G035400.1 pacid=42771956 polypeptide=Potri.009G035400.1.p locus=Potri.009G035400 ID=Potri.009G035400.1.v4.1 annot-version=v4.1 MEALLRSLHFLLALFISLKHLALAQEVNQFIYHGFTGANLSLNGIASIHPNGLLELTNTSKQQIGHAFFPFPFHFKSSFPNNSRSLSFSTNFVFAMVPET PTRGGHGIALAISPSTEFKGATATQYLGLFNSTTVGLSSNHLLAIELDAVRSPEFRDIGDNHVGIDVNNLTSIQSAPASYFSKHERENESLQLISGDPMQ VWIDYDEMENLLNVTLAPVSIMKPQKPLLSTPINLSLVVLESMYVGFSSSTGSVSSHHYILGWSFNKSGQAQSLDTSKLPSLPPERNSTNKPYLRIMIPL ITVSVLLIASFATMYIMRKRYEEVHEDWEQQYGPQRFRYKDLYKATKGFKVKGLLGYGGFGRVYRGELRSSKVEIAVKKITHDSNQGMKEFVAEIATMGR LRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKFLFCKVKPNLNWAQRYQIIRGVASALLYLHEEWEQVVLHRDVKASNVLLDADLNGRLGDFGLAKFHD HGSTPQTTNVVGTVGYLAPEITRTGKSTTCSDVFSFGTFMLEVACGRKPVESERPPEEVVLVDWVLECWKRGAILGTVDPRFEGNHVEEEMELVLKLGLL CTHRTPAARPSMRQAMQYLDGNATLPDLPLHGAGIGLVPVSNEASTEHVLTICISSDEISSYSLSDSESILSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035400 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Potri.011G161400 [exp]	2.64	0.8803
AT3G13410			unknown protein		Potri.003G223601 [exp]	5.29	0.8602
AT4G35590		RKD5	RWP-RK domain-containing 5, RW...		Potri.005G101000 [exp]	7.14	0.8009
					Potri.002G169550 [exp]	10.95	0.8025
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	11.61	0.7748
					Potri.006G273733 [exp]	11.61	0.8189
AT3G61420			BSD domain (BTF2-like transcri...		Potri.005G061366 [exp]	14.38	0.8446
AT1G75810			unknown protein		Potri.005G241200 [exp]	14.83	0.7453
					Potri.011G149950 [exp]	21.56	0.7688
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	25.09	0.7709

Compare expression of checked genes

Potri.009G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.