Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 598 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 595 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 592 / 0 RLK receptor lectin kinase (.1) AT5G60280 591 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 583 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 582 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 579 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 578 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 573 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT4G02410 568 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035601 [exp] 1016 / 0 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 1000 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 997 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 988 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 978 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 909 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035800 [exp] 872 / 0 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 862 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 664 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001564 [exp] 724 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 716 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 703 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 699 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 693 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 674 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 665 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 660 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 609 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 598 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.009G035500.1 pacid=42772863 polypeptide=Potri.009G035500.1.p locus=Potri.009G035500 ID=Potri.009G035500.1.v4.1 annot-version=v4.1 ATGGTGATTGCATCGTTCAAATCATTGCACTTTCTACTCGGCCTGTTTGTTTCCTTGAAGCTCTTGGCCTTAGCTCAAGAGGAAAACCAGTTCATCTATC ATGGCTTCACTGGAGCCAACCTGCTCCTCAGCGAGATTGCAAAAATCCATCCAAATGGTCTTTTAGAGCTGACAAACACTTCAAAACAGCAAATTGGCCG TGCTTTCTTCCCATTCCCTTTTCAGTTCAACACATCTTTATTCAACAATTCTCGGTCTCTCTCATTCTCCACCCAGTTTGCGTTTTCCATGGTCCCGGAG CTGCCCACACTTGGTGGCCAAGGCATGGCCTTCGCGATCTCTCCATCTGTGGACTTCACAGGTGCTGTGGCAGCTCAGTACTTTGGAATCCTCAATTCTA CAAGCGATGGCCTACCTTCAAACCATCTATTGGCAGTTGAGCTGGATACAGTTCAAAGCCAGGATCTTAAAGACATCAATGAGAGCCACGTTGGAATTGA TGTAAACAGCTTGATATCCATTGAATCTGCTCCGGTGACCTACTTTTCAGATGAGGAAAAGGAGAATAAGAGCTTGACTCTCATAAGTGGTCATGCGATG CACGTGTGGATAGATTACGATGAAGTAGAGATGCTACTCAATGTTACAGTTGCTCCTGTCACAAGAACAAAACCAACCTTGCCTCTCTTGTCAACACCTC TCGATCTTTCTTCTGTTATGTTGAATTCTATGTACGTTGGTTTTTCTTCATCTACTGGAGCAATGGCTAGCAATAACTATATTCTGGGGTGGAGCTTCAA CAGAGGCGGACAAGCTCAAAGTCTTGACGTGTCAAAGTTGCCTACACTTCCTACTCGAAGAAAATCAAGAAAGAAACCACAATTAAGAATTGTGGTCCCA ACAATAACAGCAATCATTTTGCTGGTAGCAATCTCTGGTGATGTTTTTATAATAAGGAGGAAGAAATATGAAGAACTGCGCGAAGATTGGGAACAGGAAT ATGGTCCGCAAAGAATCTCCTACAAGGATTTATACAAAGCAACCAAGGGTTTCACAGACAAGGAGTTGCTGGGATGTGGGGGTTTTGGAAAGGTTTACAG AGGAGTATTGCCTTCTTCCAATATGCAAGTCGCGGTCAAGAAAGTATCCCATGATTCCAGGCAAGGTACTAAGGAATTCGTTGCTGAGATTGTTAGCATG GGGAGGCTGAGGCACAGGAACTTGGTCCAGCTCTTCGGCTATTGCCGGCGAAAGGGAGAGCTCCTCTTGGTCTATGATTATATGCCCAACGGAAGCCTTG ATAAACTCCTATTTCGCAACGAGACACCCAGCCTTAATTGGGGTCGGCGATATCAAATCATCAGGGGAGTTGCGTCTGCCCTTCTTTACCTCCATGAAGA GTGGGAACAGGTTGTTCTGCATAGAGATGTGAAAGCTAGCAATGTCCTATTAGATGCCGATCTTAACGGACGGCTAGGAGATTTTGGGCTTGCTAAGTTT CATGACCATGGATCAACTCCTCAAACAACCAAAGTGGTTGGAACAGTTGGATATCTTGCACCAGAGATTACTAGAACAGGAAAGTCAACTACCTGCAGCG ATGTTTTTTCTTTTGGGACATTTATGCTCGAAGTGGCATGTGGAAGGAAGCCTGTAGAGTCAGAGAGACCACCTGAGGAGGTTGTTCTTGTTGACTGGGT ACTTGAATGCTGGAATAGAGGTGCCATTCTTGGGACAGTTGATCCTAGAATTGAAGGTAACCACGTGGAGGAAGAAATGGAGGTGGTCTTGAAGCTAGGC CTGCTCTGTACACATCGCACTCCAGCAGCTAGACCTAGCATGAGGCAAACGGTGCAATATCTGGATGGAAATGCTACTTTGCCTGATTTACCACTGCACG GTGCAGGAATCGGTTTAGTTCCAGTTAGCAATGAAGTATCTAGAGAGCATGTTTTAACAATCCCTATATCATCAGATGAAATTTCTTCCTATTCCTTGTC CGACTCCGAATCAATCCTCAGTGGTCGTTGA
AA sequence Show only first row Show all	>Potri.009G035500.1 pacid=42772863 polypeptide=Potri.009G035500.1.p locus=Potri.009G035500 ID=Potri.009G035500.1.v4.1 annot-version=v4.1 MVIASFKSLHFLLGLFVSLKLLALAQEENQFIYHGFTGANLLLSEIAKIHPNGLLELTNTSKQQIGRAFFPFPFQFNTSLFNNSRSLSFSTQFAFSMVPE LPTLGGQGMAFAISPSVDFTGAVAAQYFGILNSTSDGLPSNHLLAVELDTVQSQDLKDINESHVGIDVNSLISIESAPVTYFSDEEKENKSLTLISGHAM HVWIDYDEVEMLLNVTVAPVTRTKPTLPLLSTPLDLSSVMLNSMYVGFSSSTGAMASNNYILGWSFNRGGQAQSLDVSKLPTLPTRRKSRKKPQLRIVVP TITAIILLVAISGDVFIIRRKKYEELREDWEQEYGPQRISYKDLYKATKGFTDKELLGCGGFGKVYRGVLPSSNMQVAVKKVSHDSRQGTKEFVAEIVSM GRLRHRNLVQLFGYCRRKGELLLVYDYMPNGSLDKLLFRNETPSLNWGRRYQIIRGVASALLYLHEEWEQVVLHRDVKASNVLLDADLNGRLGDFGLAKF HDHGSTPQTTKVVGTVGYLAPEITRTGKSTTCSDVFSFGTFMLEVACGRKPVESERPPEEVVLVDWVLECWNRGAILGTVDPRIEGNHVEEEMEVVLKLG LLCTHRTPAARPSMRQTVQYLDGNATLPDLPLHGAGIGLVPVSNEVSREHVLTIPISSDEISSYSLSDSESILSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035500 [exp]	0	1
AT3G45430			Concanavalin A-like lectin pro...		Potri.009G035601 [exp]	1.00	0.8731
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108600 [exp]	1.73	0.8084	PGM.1
AT3G62260			Protein phosphatase 2C family ...		Potri.002G190400 [exp]	29.15	0.7927
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036700 [exp]	33.98	0.7600
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	37.04	0.7826
AT2G23790			Protein of unknown function (D...		Potri.005G127800 [exp]	41.35	0.7263
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.019G025600 [exp]	46.95	0.7156	SEC.2
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G023900 [exp]	52.30	0.7819
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.005G195200 [exp]	69.28	0.7805
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	75.29	0.7651

Compare expression of checked genes

Potri.009G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.