Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37710 288 / 3e-94 RLK receptor lectin kinase (.1) AT5G59260 287 / 6e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 284 / 1e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 283 / 2e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 278 / 3e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 269 / 7e-87 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 264 / 4e-85 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 262 / 4e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 261 / 4e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 260 / 1e-83 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035500 [exp] 384 / 2e-131 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 379 / 7e-131 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 362 / 4e-123 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 346 / 1e-116 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 344 / 4e-116 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 343 / 8e-116 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 340 / 3e-114 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035800 [exp] 307 / 8e-103 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088648 [exp] 303 / 5e-101 AT2G37710 710 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040773 [exp] 309 / 2e-102 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 309 / 3e-102 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 309 / 3e-102 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 309 / 3e-102 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 308 / 4e-102 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 308 / 5e-102 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 305 / 9e-101 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 303 / 4e-100 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 288 / 2e-94 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10003224 [exp] 288 / 3e-94 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G036450.1 pacid=42771192 polypeptide=Potri.009G036450.1.p locus=Potri.009G036450 ID=Potri.009G036450.1.v4.1 annot-version=v4.1 ATGCAAGTCGCGATCAAGAAAGTATCCCATGATTCCAGGCAAGGAAGTAAGGAATTCGTTGCTGAGATTGTTAGCATGGGAAGGCTGAGGCACAGGAACT TGGTCCAGCTCTTCGACTATTGTCGGCGAAAGGGAGAGCTCCTCTTAGTCTATGATTACATGCCCAATGGAAGCCTTGATAAACTCCTATTTCGCAATGA CACACCCAGCCTTAATTGGGCGCAGCGATATCAAGTCATCAGGGGAGTAGCATCTGCCCTTCTTTACCTCCATGAAGAGTGGGAACAGGTTGTTCTGCAT AGAGATGTGAAAGCTAGCAATGTTCTATTAGATGCCGATCTTAATGGACGGCTAGGAGATTTTGGGCTTGCTAAGTTTCATGATCATGGATCAACTCCCC AAACAACCAATATGGTTGGAACAGTTAGATATCTTGCACCAGAGATAGCTAGAACAGGAAAGTCAACTACCTGCAGCGATGTTTTTTCTTTTGGGACATT TATGCTCGAAGTAGCATGTGGAAGGAAGCCTGTAGAGTCAGAAAGACCACTTGAGGAGGTTGTTCTGGTTGACTGGCTTGAATGCTAG
AA sequence Show only first row Show all	>Potri.009G036450.1 pacid=42771192 polypeptide=Potri.009G036450.1.p locus=Potri.009G036450 ID=Potri.009G036450.1.v4.1 annot-version=v4.1 MQVAIKKVSHDSRQGSKEFVAEIVSMGRLRHRNLVQLFDYCRRKGELLLVYDYMPNGSLDKLLFRNDTPSLNWAQRYQVIRGVASALLYLHEEWEQVVLH RDVKASNVLLDADLNGRLGDFGLAKFHDHGSTPQTTNMVGTVRYLAPEIARTGKSTTCSDVFSFGTFMLEVACGRKPVESERPLEEVVLVDWLEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	0	1
AT3G03210			unknown protein		Potri.004G080600 [exp]	1.00	0.9115
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	2.00	0.9057
					Potri.002G200150 [exp]	3.00	0.8727
					Potri.003G098301 [exp]	3.46	0.8918
AT3G52910	GRF	ATGRF4	growth-regulating factor 4 (.1...		Potri.006G115200 [exp]	3.74	0.8544
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	4.58	0.9001
					Potri.001G121350 [exp]	5.09	0.8546
AT5G24450			Transcription factor IIIC, sub...		Potri.017G007200 [exp]	5.29	0.8787
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014401 [exp]	5.47	0.8703
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	5.47	0.8845

Compare expression of checked genes

Potri.009G036450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.