Plant FIBer expression Database

Potri.009G036700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07470 358 / 6e-122 Transcription factor IIA, alpha/beta subunit (.1)
AT1G07480 356 / 6e-121 Transcription factor IIA, alpha/beta subunit (.1.2)
AT5G59230 69 / 2e-13 transcription factor-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G244204
[exp]
591 / 0 AT1G07470 343 / 4e-116 Transcription factor IIA, alpha/beta subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016503
[exp]
394 / 9e-135 AT1G07470 349 / 1e-117 Transcription factor IIA, alpha/beta subunit (.1)
Lus10040769
[exp]
379 / 7e-130 AT1G07470 354 / 7e-121 Transcription factor IIA, alpha/beta subunit (.1)
Lus10001563
[exp]
266 / 2e-86 AT1G07480 255 / 9e-83 Transcription factor IIA, alpha/beta subunit (.1.2)
Lus10004981
[exp]
198 / 2e-60 AT1G07480 193 / 4e-59 Transcription factor IIA, alpha/beta subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03153 TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence
>Potri.009G036700.1 pacid=42772739 polypeptide=Potri.009G036700.1.p locus=Potri.009G036700 ID=Potri.009G036700.1.v4.1 annot-version=v4.1
ATGGCGTCATCGGATGCAACAAGCCCCGTTTACATCAACGTCATCGAAGACGTCATCAACAAGGTCCGCGACGAGTTCATCAATAACGGTGGGCCCGGTG
AGACCGTCCTTTATGAGCTTCAAGGACTTTGGGAGACGAAAATGATGCAAGCAGGTGCTATATGTGGTACAATAGATAGGTCATCAGCTAATAAGCTGCC
GGTACCTGGTGGTCCAATTACTCCAGTACACGACCTTAATGTACCGTATGAAGGGACCGAGGAATATGAGACTCCCACTGCTGAGATACTCTTCCCTCCT
ACACCAATGCAAACACCCATGCAGACGCCATTACCAGGAAGTGCGCAAACACCTTTACCTGGAAGTGCGCAAACACCTTTACCTGGAAATGCGCAAACAC
CTTTACCTGGAAGTGTGGACAATTCATCCATGTATAACATTCCTACTGGATCTAGTGATTATCCCACCCCTGTCAGTGATGCTGGGGGCAGTACCGATGG
AAAAGCTGGGAGACCCAGCCCTTTCATGCAACCTCCCACTTGGATGCATCAAAGGCCGCCTCTTAGTGTTGATGTCAATGTTGCTTATGTTGAAGGGCGG
GATGAGGTGGACAGAGGGACCTCTCACCAAGCCTTGACACAGGACTTCTTCATGCCTTCTGGAAAACGGAAGCGCGAGGATTTTGCTCCGAAATATAACA
ATGGTGGATTCATACCCCAGCAAGATGGAGCTGGGGATTCTGCTTCTGAGGTTTCTCAGGTAAGCCAAGGGAATGATCCTCTTGGAAGATGTGACACTAG
CACCACTAAAAATAAAGAGATCTTAGCACGTGTGTCGAGGTCATATTTGAAGATTCCTCAAGTGGATGGGCCAATTCCTGATCCTTATGATGATGTGCTT
TCTACTCCCAATATATACAATTATCAAGGAGTTGCCAATGAAGATTACAACATAGCAAACACACCAGCTCCCAATGATCCACTGGCAAGTACCCCAGCTG
TTGTCAGTCAAAATGATGTTGCTGATGATGATGATGATGATGAGCCGCTGAATGAAGATGATGATGATGATGAGGATCTGGATGATGTGGACCAAGGAGA
GGAGCTGAATACGCCGCAACATTTGGTTTTAGCTCAATTTGACAAGGTGACCCGTACCAAGAGCAGGTGGAAATGCATACTCAAGGATGGTATTATGCAT
ATAAACAACAAGGACATTCTCTTTAATAAGGCAACAGGAGAATTTGACTTTTGA
AA sequence
>Potri.009G036700.1 pacid=42772739 polypeptide=Potri.009G036700.1.p locus=Potri.009G036700 ID=Potri.009G036700.1.v4.1 annot-version=v4.1
MASSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWETKMMQAGAICGTIDRSSANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEILFPP
TPMQTPMQTPLPGSAQTPLPGSAQTPLPGNAQTPLPGSVDNSSMYNIPTGSSDYPTPVSDAGGSTDGKAGRPSPFMQPPTWMHQRPPLSVDVNVAYVEGR
DEVDRGTSHQALTQDFFMPSGKRKREDFAPKYNNGGFIPQQDGAGDSASEVSQVSQGNDPLGRCDTSTTKNKEILARVSRSYLKIPQVDGPIPDPYDDVL
STPNIYNYQGVANEDYNIANTPAPNDPLASTPAVVSQNDVADDDDDDEPLNEDDDDDEDLDDVDQGEELNTPQHLVLAQFDKVTRTKSRWKCILKDGIMH
INNKDILFNKATGEFDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G07470 Transcription factor IIA, alph... Potri.009G036700
[exp]
0 1
AT3G57030 Calcium-dependent phosphotries... Potri.016G037900
[exp]
9.48 0.6256
AT1G71080 RNA polymerase II transcriptio... Potri.010G114900
[exp]
10.24 0.6106
AT1G60900 U2 snRNP auxilliary factor, la... Potri.011G050400
[exp]
11.95 0.6158
AT5G46210 CUL4, ATCUL4 cullin4 (.1) Potri.004G132900
[exp]
18.73 0.5849
AT3G10330 Cyclin-like family protein (.1... Potri.006G048400
[exp]
19.33 0.6210 TFIIB1.2
AT3G15080 Polynucleotidyl transferase, r... Potri.001G373500
[exp]
21.35 0.6248
AT1G21710 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA G... Potri.005G180700
[exp]
55.49 0.5960 OGG1.1
AT5G06440 unknown protein Potri.016G067000
[exp]
62.44 0.5833
AT2G35920 RNA helicase family protein (.... Potri.016G068900
[exp]
67.14 0.5651
AT5G16760 AtITPK1 inositol \(1,3,4\) P3 5/6-kina... Potri.019G047200
[exp]
79.77 0.5706

Potri.009G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.