Plant FIBer expression Database

Potri.009G036900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1)
AT1G60200 44 / 0.0007 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G244600
[exp]
450 / 5e-145 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001561
[exp]
286 / 8e-84 AT2G29210 263 / 1e-75 splicing factor PWI domain-containing protein (.1)
Lus10004983
[exp]
264 / 5e-76 AT2G29210 252 / 5e-72 splicing factor PWI domain-containing protein (.1)
Lus10030623
[exp]
45 / 0.0002 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
Lus10029161
[exp]
45 / 0.0003 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
Lus10013003
[exp]
45 / 0.0003 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G036900.1 pacid=42770730 polypeptide=Potri.009G036900.1.p locus=Potri.009G036900 ID=Potri.009G036900.1.v4.1 annot-version=v4.1
ATGTCGGGCGGGTTTTTCCGGGGCACGTCTGCTGATCAAGACACTCGATTCTCCAACAAGCAAGCGAAGCTGTTGAAGTCGCAGAAGTTCGCTCCCGAAT
TGGACCATCTGGTGGATACGAGGAAAATGAAGATGGATGTTATTAGACCGTGGATTGCTACTAGAGTGACGGAGCTTCTCGGCTTTGAAGATGAAGTTCT
TATCAACTTCATTTATGGCCTGCTTGATGGAAAGGAAGTGAATGGGAAGGAGGTTCAAATATCGCTTACAGGATTCATGGAGAAAAACACTGGGAAGTTT
ATGAAAGAGCTTTGGACACTTCTTCTTAGTGCGCAGAAGAATGAAAGTGGTGTTCCTCAACAGTTTTTGGATGCCAAAGAAGAAGAAACACGGAAGAAGC
AGGCAGAGGTCGATAGGATAGCAAATGAAATCCAGAAGAAGAAGGAGATAGAGAAGGAGATGAGAGAACTTGAGAGGGAAAAATTGAAGAAGATGGACAT
TGAGGTTGAAAAGAAAGCCAATAATGCTATGGAGCCAGCCTCAAAGCACATGCTGCCTAAGGGTTCAAGTGGCCATGATGAGGATGAGAAAGAAACTGAC
ATGAGGAATGGTGCAAGAGGAAGGAAAAGGGCTTCTAGGTCTCCTCATTCGACTGATCGTTCATTTTCATCTCCTCGAGGCTCACCTTCTAGGACTAGCA
GGTTAATTTTAAATTCAAGAAGTCATTCAGGGCATAAGTCAAGAAGTGTGTCTAGATCACCTGAAGTACGAAGGCAGCGCTCCATATCTTCTGATAGAAG
GCGCTCACTAAGAAGGCGCTCAATTACTCCTCGTCGAAGGCGTTCACCCAGAGATTCACCCTCCCCACCTCGGAGGAAATCATCATACTCCAGGCATATA
TCTAGATCTCCTTTAAGACATAGGTCACCATCCCCTATACGACGTAGATTGCGTTCTCCCTTTCGACGCAGGTCACCTTCACCCTTGCATGATAGATCTC
CTTCACCAGTTCGACGTCGCAGATCCCCCTCACCTGTTCGACGTCGTAGATCCCCCTCACCTGTTCGACGTCGGAGATCCCCCTCACCTATTAGGCGCCG
AAGATCCCCCTCACCTATTAGGCGCCGTAGATCCCCTTCCCCTGTGCGCCGTAGATCCCCTTTCCCTATGCGCCGCAGATCCCCATTGCCTTTAAGGCGT
AGATCACCTTCACCTGTGTCACGTAGATCACCTTCACCTCTTCGTCGTAGATCACCCCCTTCCTTACGACGCAGATCACCATCTCCTGTACGTCGGGGGT
ATCAAAGGTCTCCTTCTACTCCTCGTCGTGGGTCTCCTTCTCCTATGCAACATAGGTCATCTATTATTTCACGCAAGAGATCTCCATCTCCTCATCGTCG
GTCTCCTTCGCCTTACACTTCAAGCTCTCCATCTCCTGTCCAGCATAGGTCCCCTTCTCCAGTGAAATCTCCAAAGGAACACAGATCACCCGTGCAGTCT
CCTGGAGAAAGAGTTAGATTACAACAAAAATTGTTGCCTATTCCACGCCGGTCCTCAAATTCTTTGAGGTCACCACAAAGAGATCAGAAGGATCAGAAAG
ATTTATCCAATAGATTGCCAGCTTTATCTCCTTCACCAGAGAGGTCCCCACTCCGGCCAGAATCTCCGCCATTTGCAAGAAAGAGTGCCAGCAAAGATGG
AAGGTCCCCTAGTCCATATGAGAGTCCTGCCAGGCAAAGAAAAGAGCAAATTACACGTGATGGTAGCTTAAGTCCTCAGAAACAAAGAGGGAGGAAACCT
CTTAAGGATAGTCCAGAAACTAGCAAAGACCATGATGAAACTGGTCATACTCGGGAGGGTGGGGACTATTATTCTAGGTCATCATGGAAACGACCTATAC
ATCCTTCCAACATTAATAAGCAGAAAGATTCTTCTGTGAAGGTTCACTACAAGGATGAACAATCTTCTGAAAGATTAGCCAGTCGTCGGACTACTGATTC
CAGAAACTATCCAGATAACATGGATTCGAGGAAGAAAGACCAGGATATAAAGATTGGGAAGTCTTCTGGGAGGGGCGCTGATCATGATCTTGATGCAAAA
AAATCTCCAACTTTGTACAAGGATGAGAAAGACCGTTCATGCTTAAACAGTGTTAAGGATAGTGATAAACATCCCAAGTCAGAAACCGCACCAGTGACAG
CTGAACAAGTCCATCATAGTAATGGCAGTGGTGCATTGGATTCTGGTTCTAAGGAAAGTGATAAGCATAGAGCAGAAAAGAGGGAAAAGTCAAAGCATAA
AAGGTTGCATCGGCTTGAAGTGGCTTCGGATGATGATGGCAGCCATGGTTCTGAAATTGAAGAGAGGAAAGAGGTTAAAAGGAGGAGGAAGGAAGAAAAG
AAATTGCGAAAGGAGGAGAAGCATCGACGGCGCGAGGAGCGGCGCCGTAGGAGGGAGGAACGGCGTGCAGAGAAGCTAAAATTGAAGGATTGTGGTGATG
CTAGTTCTTCCGATGATGAACATGTTGGCAGGAGGGAGTCCCATCCAAGTGATGATGAGGAGATAGAGTCTGATCAGAAAAAACTTGAGATTGAGTTAAG
GAAGAAGGCTCTTGAATCACTTAAAGCGAAGAAGGGCATCAATCGCTAA
AA sequence
>Potri.009G036900.1 pacid=42770730 polypeptide=Potri.009G036900.1.p locus=Potri.009G036900 ID=Potri.009G036900.1.v4.1 annot-version=v4.1
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDTRKMKMDVIRPWIATRVTELLGFEDEVLINFIYGLLDGKEVNGKEVQISLTGFMEKNTGKF
MKELWTLLLSAQKNESGVPQQFLDAKEEETRKKQAEVDRIANEIQKKKEIEKEMRELEREKLKKMDIEVEKKANNAMEPASKHMLPKGSSGHDEDEKETD
MRNGARGRKRASRSPHSTDRSFSSPRGSPSRTSRLILNSRSHSGHKSRSVSRSPEVRRQRSISSDRRRSLRRRSITPRRRRSPRDSPSPPRRKSSYSRHI
SRSPLRHRSPSPIRRRLRSPFRRRSPSPLHDRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPIRRRRSPSPIRRRRSPSPVRRRSPFPMRRRSPLPLRR
RSPSPVSRRSPSPLRRRSPPSLRRRSPSPVRRGYQRSPSTPRRGSPSPMQHRSSIISRKRSPSPHRRSPSPYTSSSPSPVQHRSPSPVKSPKEHRSPVQS
PGERVRLQQKLLPIPRRSSNSLRSPQRDQKDQKDLSNRLPALSPSPERSPLRPESPPFARKSASKDGRSPSPYESPARQRKEQITRDGSLSPQKQRGRKP
LKDSPETSKDHDETGHTREGGDYYSRSSWKRPIHPSNINKQKDSSVKVHYKDEQSSERLASRRTTDSRNYPDNMDSRKKDQDIKIGKSSGRGADHDLDAK
KSPTLYKDEKDRSCLNSVKDSDKHPKSETAPVTAEQVHHSNGSGALDSGSKESDKHRAEKREKSKHKRLHRLEVASDDDGSHGSEIEERKEVKRRRKEEK
KLRKEEKHRRREERRRRREERRAEKLKLKDCGDASSSDDEHVGRRESHPSDDEEIESDQKKLEIELRKKALESLKAKKGINR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29210 splicing factor PWI domain-con... Potri.009G036900
[exp]
0 1
AT2G25320 TRAF-like family protein (.1) Potri.006G256400
[exp]
1.00 0.8421
AT2G30530 unknown protein Potri.013G160100
[exp]
1.73 0.8338
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Potri.019G054600
[exp]
5.83 0.8397
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.009G155400
[exp]
7.07 0.8152
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.001G207700
[exp]
9.79 0.8224
AT1G10390 Nucleoporin autopeptidase (.1.... Potri.011G148800
[exp]
12.48 0.7848
AT3G09850 D111/G-patch domain-containing... Potri.006G189501
[exp]
13.85 0.8045
AT1G58060 RNA helicase family protein (.... Potri.004G222900
[exp]
13.96 0.7793
AT2G33540 CPL3, ATCPL3 C-terminal domain phosphatase-... Potri.003G164300
[exp]
14.24 0.7949
AT3G09060 Pentatricopeptide repeat (PPR)... Potri.016G111600
[exp]
17.29 0.7838

Potri.009G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.