Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46780 504 / 2e-175 PTAC16 plastid transcriptionally active 16 (.1) AT3G18890 84 / 5e-17 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 56 / 2e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244800 [exp] 714 / 0 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.004G150300 [exp] 96 / 7e-21 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 94 / 4e-20 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 94 / 4e-20 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 64 / 4e-11 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016502 [exp] 573 / 0 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10040768 [exp] 567 / 0 AT3G46780 540 / 0.0 plastid transcriptionally active 16 (.1) Lus10026321 [exp] 92 / 2e-19 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 90 / 7e-19 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 63 / 1e-10 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 60 / 1e-09 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.009G037000.1 pacid=42771510 polypeptide=Potri.009G037000.1.p locus=Potri.009G037000 ID=Potri.009G037000.1.v4.1 annot-version=v4.1 ATGGCTCCAGCTCTCACCTCCAACTCATTTCTCCTGAACACCACGCCCCATTCAAGACTCTCCCTCGAGAACCCAAGACTCAGAGTCTTTGCCAAAAAAG CCGGACCCTTCTCCACATTTCAGTTCGGCAAACCAAAAGATGATGAAAGTCAAACTGATGGTTCAGGCAATTCAAGTCCCTTTAATTTCAACTTTGGCAA GGTACCTGACATGAAGTCTTTGGTGCCTGTTGTGAGCAAGCCTTCTTCCGGGTTGTCATTTGGGAACATCAGAAGGAAGGACCCTGGCACTGTTTTTGTT GCTGGTGCTACTGGGCAGGCTGGCATTCGTATTGCACAGACGCTACTGCGTGAGGGTTTTAGTGTAAGAGCTGGGGTTCCTCAGCTTGGAGATGCTCAGG AGTTGGCTCTTCTTGCCGCCCAGTACAAGATCATATCAAATGAGGAATCAAAGCGCCTCAATGCTGTTGAATCCACCTTCCAAGATACAGAATCAATTGC CAAAGCAATTGGCAATGCAAGCAAAGCAGTGGTTACAATTGGTCCTACAGAGAATGGCCCCACCTCTGAGGTCTCCACATTGGACGCCTTGCAAGTAATC GAAGCTGCTCAGCTAGCAGGAGTCGGCCATGTTGCCATAATCTATGATGGGAACCCAGCCAGTTCATCAACTAACAATGTGCTAGATGGATTCAAAACAT TCTTTAACAACCTGTTCTCGCAATCTCAGCTTTCTGTACCTGAGTTCTTGCAGAAAGTGATTGAAACAGATGTTAGCTATACTTTTATAAAGACAAGTTT GACAGAAGACTTTTCACCAGAGAGTTCTTATAATGTTGTTGTGTCAGCTGAAGGAAGCACTGGTACAGGCGACTTCAAAGTAGCCAAGTCCCAGATAGCG TCCGTGGTGGCAAATGTTTTCTCAAATACATCGGTGGCAGAAAATAAGGTTGTGGAAGTTTTTACTAATCCATCGGCACCATCAAAACCTGTGGATGAGC TTTTCAGTGCCATTCCTGAAGATGGAAGAAGAAAAGTCTATGCAGAAGCTCTTGCAAAGGCAAAAGCAGAGGAAGAGACAAGGGTAGCTGCTGAGAAAGC ATCCGAGGCAGCTGAGGCAGCCAAAAAGCTGGGAGATGAAGTGAAAAAGCTTTCAGAGCAAGGAGCTAAAGCTGCTAGTCTAGCTGAAGAAGCCCAGGGG AAGGCCGAGGCTGCAGGGGCGTCAGTGGAAAACTTCTTGAGTAAAGCAACAGGAGTTAGTTCAGGGTTCTCTTGGGAAAAACTTAGCTCCCAGTTATCAA CTGCGGTTCAAACGACTAGTGAAAATACAAAAGTGCAGCTCGCAACTGTCAGGGGACAAGCCAAGGCTCGTTCTTTGCCGGTCCAGAAAGCTGTAGTTAA ACAGCCTTCACCTAAACCTCGTGCTTTGAAACCAAAGGAGGAGCCAAAGCCGAAGGCTAAAGAGACAGAGTCAAAGGCAGAAGTGCGGAAGGTGTTTGGT GGCCTTTTTCAGCAAGAAACCATTTACATCGATGATGACTGA
AA sequence Show only first row Show all	>Potri.009G037000.1 pacid=42771510 polypeptide=Potri.009G037000.1.p locus=Potri.009G037000 ID=Potri.009G037000.1.v4.1 annot-version=v4.1 MAPALTSNSFLLNTTPHSRLSLENPRLRVFAKKAGPFSTFQFGKPKDDESQTDGSGNSSPFNFNFGKVPDMKSLVPVVSKPSSGLSFGNIRRKDPGTVFV AGATGQAGIRIAQTLLREGFSVRAGVPQLGDAQELALLAAQYKIISNEESKRLNAVESTFQDTESIAKAIGNASKAVVTIGPTENGPTSEVSTLDALQVI EAAQLAGVGHVAIIYDGNPASSSTNNVLDGFKTFFNNLFSQSQLSVPEFLQKVIETDVSYTFIKTSLTEDFSPESSYNVVVSAEGSTGTGDFKVAKSQIA SVVANVFSNTSVAENKVVEVFTNPSAPSKPVDELFSAIPEDGRRKVYAEALAKAKAEEETRVAAEKASEAAEAAKKLGDEVKKLSEQGAKAASLAEEAQG KAEAAGASVENFLSKATGVSSGFSWEKLSSQLSTAVQTTSENTKVQLATVRGQAKARSLPVQKAVVKQPSPKPRALKPKEEPKPKAKETESKAEVRKVFG GLFQQETIYIDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	0	1
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	1.73	0.9720	2,Pt-LHCB2.1
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	3.00	0.9698
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	3.46	0.9703
					Potri.004G158800 [exp]	3.74	0.9515
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	3.87	0.9681
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	4.89	0.9694
					Potri.004G050600 [exp]	7.93	0.9570
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Potri.001G348900 [exp]	8.00	0.9582	CA1.3
AT3G48200			unknown protein		Potri.015G079000 [exp]	9.48	0.9431
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	11.22	0.9649	Lhcb3-1,LHCB3.2

Compare expression of checked genes

Potri.009G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.