Plant FIBer expression Database

Potri.009G037500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G037500.1 pacid=42772865 polypeptide=Potri.009G037500.1.p locus=Potri.009G037500 ID=Potri.009G037500.1.v4.1 annot-version=v4.1
ATGAGAAGCGTAACCAGCTGGTGTACTGCCTGCATCCCAGGCCGTAAGCAGAAAGAAACCAAGACTGAAGAATCGGAGAAATCTTTAAGGAAAAAACCTT
CCCGCGAAGAATCTAGTGGTCCTGATGACCAAGCTGAAGGCAGCAGCCATCAAGGAACCACCCATGCTGCCAGTAGTGCTGATACTGGTGGCGCAGCTGT
TGTAGTTATGACTGCAACCCAAATGTCTGACATGGAAGGTAGTTCTCATGGCGGCGGCGGGGGCGACGGAGGTGGCGGTGACGGTTAA
AA sequence
>Potri.009G037500.1 pacid=42772865 polypeptide=Potri.009G037500.1.p locus=Potri.009G037500 ID=Potri.009G037500.1.v4.1 annot-version=v4.1
MRSVTSWCTACIPGRKQKETKTEESEKSLRKKPSREESSGPDDQAEGSSHQGTTHAASSADTGGAAVVVMTATQMSDMEGSSHGGGGGDGGGGDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G037500
[exp]
0 1
AT1G74520 ATHVA22A HVA22 homologue A (.1) Potri.015G062800
[exp]
2.44 0.8712
AT4G34490 ATCAP1 cyclase associated protein 1 (... Potri.009G115500
[exp]
4.47 0.8568 Pt-CAP1.2
AT1G73620 Pathogenesis-related thaumatin... Potri.012G047800
[exp]
4.47 0.8586
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.001G236700
[exp]
8.94 0.8442 ADF1,Pt-ADF.5
AT5G15230 GASA4 GAST1 protein homolog 4 (.1.2) Potri.017G083000
[exp]
9.79 0.8634 GASA4.2
AT3G63200 PLP9, PLAIIIB ,... PATATIN-like protein 9 (.1) Potri.002G052600
[exp]
12.04 0.7994
AT5G56230 PRA1.G2 prenylated RAB acceptor 1.G2 (... Potri.001G472300
[exp]
12.96 0.8005
AT2G45340 Leucine-rich repeat protein ki... Potri.014G068700
[exp]
14.07 0.8342
AT1G69080 Adenine nucleotide alpha hydro... Potri.010G140200
[exp]
14.07 0.8203
AT5G17600 RING/U-box superfamily protein... Potri.003G093100
[exp]
14.28 0.8283

Potri.009G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.