Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRR2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46790 997 / 0 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 483 / 2e-160 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 470 / 2e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 471 / 2e-156 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 471 / 7e-156 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 465 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 451 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 450 / 6e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 446 / 2e-148 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 443 / 6e-146 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051300 [exp] 483 / 2e-163 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 474 / 2e-159 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 469 / 9e-158 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 474 / 4e-157 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 464 / 2e-156 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 459 / 5e-154 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 465 / 3e-153 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 462 / 4e-153 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 460 / 2e-152 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004987 [exp] 734 / 0 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 496 / 1e-168 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 468 / 6e-157 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 471 / 3e-156 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 464 / 2e-155 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 458 / 2e-151 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 455 / 2e-151 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 458 / 1e-150 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 458 / 1e-150 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 456 / 6e-150 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.009G037600.1 pacid=42772126 polypeptide=Potri.009G037600.1.p locus=Potri.009G037600 ID=Potri.009G037600.1.v4.1 annot-version=v4.1 ATGTGGGCTTTTCAGTCTCCCAAAACTACGCTTCTACCTTCCAACGCCACTTTCTTGCCTCGCCCTTCTCTAAAACCCCCGATTTGCTCCATAACCTTAA ATCCCACAGCTTCCACTGCCGACAACAACAAACTAATCCAATCTCTTTGCAAACAAGGCAACCTCACACAAGCTCTTGAGCTCCTCTCTCTTGAGCCCAA TCCTGCCCAACACACTTATGAGCTTCTAATTCTTTCTTGCACCCACCAAAACTCTCTCCTTGACGCCCAACGCGTTCATCGCCACCTCCTTGAAAATGGG TTCGACCAGGATCCGTTTCTGGCCACCAAACTCATCAACATGTATTCCTTTTTTGACTCAATTGACAATGCACGCAAGGTGTTTGATAAAACGCGAAACA GAACTATTTATGTTTATAATGCGCTCTTTCGAGCGCTTTCGTTGGCGGGTCATGGAGAAGAGGTTTTGAACATGTACCGTAGAATGAATTCTATTGGGAT TCCCTCTGATAGGTTCACTTATACGTACGTGCTTAAAGCTTGTGTTGCATCAGAATGTTTTGTGTCGCTGCTAAACAAGGGAAGAGAGATTCATGCCCAT ATTTTGCGACATGGATATGATGGATATGTCCATATTATGACCACCTTGGTAGATATGTATGCAAAGTTTGGTTGTGTATCTAATGCGAGCTGTGTTTTCA ATCAGATGCCAGTGAAAAATGTTGTTTCTTGGAGTGCTATGATTGCTTGTTATGCGAAGAATGGGAAGGCTTTCGAGGCATTGGAGCTGTTCAGGGAATT GATGCTTGAGACTCAAGATTTATGTCCGAATTCTGTGACAATGGTTAGTGTACTTCAAGCTTGTGCTGCACTTGCAGCACTGGAACAAGGGAGGTTGATA CATGGATATATTCTTAGAAAGGGACTTGACAGTATCTTGCCAGTAATTAGTGCCCTTGTTACTATGTATGCTAGATGTGGTAAGCTTGAATTGGGGCAAC GAGTTTTTGATCAGATGGATAAGAGAGATGTTGTTTCGTGGAATTCTTTGATTTCAAGTTATGGGGTTCATGGATTCGGAAAGAAAGCAATTGGAATTTT TGAAGAGATGACCTACAATGGTGTAGAACCTAGCCCCATATCTTTTGTTAGTGTTTTGGGAGCTTGCAGTCATGCAGGACTTGTTGACGAGGGAAAGATG TTGTTTAGCTCGATGCATGTAGCGCATGGGATATGTCCTAGTGTTGAGCATTATGCTTGTATGGTGGATCTTCTTGGGCGTGCCAATAGGTTAGAAGAAG CTGCTAAGATTATAGAGAATATGCGGATTGAACCAGGACCTAAGGTTTGGGGTTCTCTTCTTGGATCATGTAGGATTCATTGTAATGTTGAGCTTGCAGA GAGGGCAAGCATAAGGCTTTTTGACCTTGAGCCTACAAATGCTGGGAATTATGTGCTCCTTGCTGATATTTATGCTGAAGCCGGTATGTGGGATGGAGTC AAAAGAGTTAAGAAGCTCCTAGAAGCTAGGGGATTGCAAAAAGTCCCAGGTCGCAGTTGGATAGAAGTTAAAAGGAAAATCTACTCATTTGTCTCTGTTG ATGAGGTTAATCCACGGATGGAGCAGCTCCATGCTTTGTTGGTTAAATTGTCAATGGAATTGAAGGAGGAAGGCTACGTGCCACAGACCAAAGTTGTGCT CTATGATCTCAAGGCAGCAGAAAAGGAACGGATTGTGCTAGGTCATAGCGAAAAACTGGCTGTTGCCTTTGGACTCATCAACAGTAGCAAGGGGGAAGTC ATTCGGATAACCAAAAGCTTGCGGTTATGCGAAGATTGTCACTCCTTTACCAAGTTCATTTCCAAGTTCGCTAATAAGGAGATTCTGGTAAGAGATGTGA ATCGATTTCACCATTTTCGTGACGGGGTTTGTTCCTGTGGGGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.009G037600.1 pacid=42772126 polypeptide=Potri.009G037600.1.p locus=Potri.009G037600 ID=Potri.009G037600.1.v4.1 annot-version=v4.1 MWAFQSPKTTLLPSNATFLPRPSLKPPICSITLNPTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG FDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAH ILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLI HGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKM LFSSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGV KRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEV IRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	0	1	CRR2.1
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	1.00	0.9578
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	2.44	0.9495
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	2.82	0.9537
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	3.31	0.9443
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	3.74	0.9475
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	3.87	0.9491
AT4G24500			hydroxyproline-rich glycoprote...		Potri.005G153300 [exp]	4.89	0.9443
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	5.09	0.9324
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	5.74	0.9286
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	6.32	0.9475

Compare expression of checked genes

Potri.009G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.