Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOPP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59160 553 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 549 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 547 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT3G46820 538 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 508 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 506 / 0 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 501 / 2e-180 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 490 / 2e-176 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 484 / 5e-174 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 296 / 1e-99 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245700 [exp] 621 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.010G197600 [exp] 553 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 551 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 549 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 545 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 521 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 520 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 492 / 5e-177 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 486 / 9e-175 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016489 [exp] 585 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 583 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 558 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 554 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 554 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 554 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 541 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 539 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10021872 [exp] 505 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 498 / 8e-179 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF16891 [poplar] [flax] STPPase_N Serine-threonine protein phosphatase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G037700.1 pacid=42772096 polypeptide=Potri.009G037700.1.p locus=Potri.009G037700 ID=Potri.009G037700.1.v4.1 annot-version=v4.1 ATGGCAGGGGAAGGACAGCAGCAGAAGGGGGCAACAACAATGGAGGCAGGTCTTTTAGACAGCATAATAAGTCGTTTATTAGAATTTAGACAAGCGAGGT TAGCCAAACAACCGCAGGTTCAGCTTAGCGAAAACGAGATCCGCCAACTCTGTGCTGTTTCTAGAGATATCTTTCTTCAGCAACCCAATCTTCTCGAGCT CGAAGCCCCCATCAAGATCTGTGGTGACATTCATGGGCAATATTCAGATCTTTTGAGGCTTTTTGAATATGGAGGCTTTCCTCCCAGTGCCAATTATTTA TTCCTAGGTGATTATGTGGACCGTGGGAAGCAAAGTTTGGAAACAATATGCCTTTTGCTTGCCTACAAAATCAAGTATCCTGAGAACTTCTTCCTTTTAA GAGGAAACCATGAGTCTGCATCTATTAATCGAATTTATGGATTCTATGACGAATGTAAAAGACGCTTCAATGTGAAACTTTGGAAAACATTTACAGATTG TTTTAACTGTCTTCCTGTTGCTGCTCTTATAGATGACAAAATATTGTGCATGCATGGTGGGCTTTCCCCTGATTTAACAAATTTGGATCAAATTAGGAAC TTACCTCGTCCAACTGACGTCCCAGATTCTGGTTTGCTTTGTGATTTACTTTGGTCTGATCCTGACAAGGATATCAAAGGCTGGGGAATGAATGACCGGG GGGTGTCATATACCTATGGCCCTGATAAGGTTGCAGAATTCTTAATGAAGAATGATATGGACCTTGTTTGTCGTGCTCATCAGGTTGTTGAGGATGGATA TGAATTCTTCGCAGAGAGGCAGCTTGTAACAATATTTTCAGCTCCCAACTATTGTGGTGAATTTGATAATGCCGGTGCAGTGATGAGTGTTGACGAAACC CTAATGTGCTCTTTCCAAATACTTAAGCCAGCAGATAAAAAGTTCATGTGA
AA sequence Show only first row Show all	>Potri.009G037700.1 pacid=42772096 polypeptide=Potri.009G037700.1.p locus=Potri.009G037700 ID=Potri.009G037700.1.v4.1 annot-version=v4.1 MAGEGQQQKGATTMEAGLLDSIISRLLEFRQARLAKQPQVQLSENEIRQLCAVSRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPSANYL FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVKLWKTFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRN LPRPTDVPDSGLLCDLLWSDPDKDIKGWGMNDRGVSYTYGPDKVAEFLMKNDMDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAVMSVDET LMCSFQILKPADKKFM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	0	1	Pt-TOPP1.1
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	3.87	0.6130
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101250 [exp]	9.32	0.5831
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Potri.013G049100 [exp]	10.67	0.5849
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	13.96	0.5717
AT2G24170			Endomembrane protein 70 protei...		Potri.006G184200 [exp]	18.54	0.4911
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Potri.004G094400 [exp]	19.74	0.5684
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	22.22	0.5446
					Potri.001G241254 [exp]	22.97	0.5476
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	27.74	0.5653
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.002G023400 [exp]	28.98	0.5186	Pt-E2FC.1,E2Fc

Compare expression of checked genes

Potri.009G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.