Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 778 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 768 / 0 subtilase family protein (.1) AT5G59130 767 / 0 Subtilase family protein (.1.2) AT3G46850 758 / 0 Subtilase family protein (.1) AT5G59120 754 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46840 748 / 0 Subtilase family protein (.1) AT5G58840 743 / 0 Subtilase family protein (.1) AT5G58820 738 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 732 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58830 726 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 820 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.010G196800 [exp] 693 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 689 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 652 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196700 [exp] 635 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 578 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.002G151900 [exp] 575 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 557 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 509 / 1e-171 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040750 [exp] 717 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016482 [exp] 707 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10016484 [exp] 698 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 654 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 647 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10002964 [exp] 639 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 629 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10042555 [exp] 615 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 611 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 604 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G037900.2 pacid=42770828 polypeptide=Potri.009G037900.2.p locus=Potri.009G037900 ID=Potri.009G037900.2.v4.1 annot-version=v4.1 ATGGCTGGAATCTTCAGTTCTCTGTCTTCATACTGCATCCTGTTGGTTTTCATTATTGTTGCTGACCTTAGTTTATGCACTGCTCAAAATGATAAGCAGG TCTATATTGTGTACATGGGCTCGCTTCCTACGGGTGAATACTCACCCACTTCTCACCACCTCAGTCTTCTTGAAGAAATTGTCGAAGGAAGATCTGCGGA TGGTGCGCTAGTTAGAAGCTATAATAGGAGTTTCAATGCATTTGCAGCCAGACTCAGTCATGCGGAGGTAGAGAGAATCTCTGGCCTGAAGGAAGTGGTG TCTGTATTCCCTAGTAGAAGATCTCAACTTCTGACGACAAGATCATGGGACTTCATGGGGTTTCCTGAAAATGTGAAAAGGAACCCCACAGTAGAAAGTA ATATAATAATTGGGGTTATTGACTCAGGAATCTGGCCTGAGTCAGAGAGTTTTGCTGATAAAGGTTTTGGTCCTCCTCCTGCAAAATGGAAGGGAACTTG TGCTGGTGGCAAGAATTTTACTTGCAACAATAAGATCATTGGAGCTCGAGTTGAATTCACTTCAGGGGCTGAAGCTACCGCAAGGGACACTGAAGGCCAT GGTAGCCACACAGCATCAACAGCAGCTGGCAACACAGTATCAGGCGCGAATTTTTACGGACTGGCTCAAGGAAATGCCAGAGGAGCGGTTCCATCAGCAA GGATTGCTGTTTACATGGCCTGTGAGGAGTTTTGTGATGACCATAAAATACTTGCTGCCTTTGATGATGCCATTGCTGATGGGGTTGACATAATCACAAT TTCAATAGCGAAGGATGTCCCATTTCCATATGAAAACGATACTATTGCCATAGGGGCCTTTCATGCAATGGAGAAAGGGATACTCACTGTACAAGCAGCA GGAAACAGTGGTCCTGATCCATTTACTGTATCAAGCCATGCACCATGGATAATTTCAGTTGCAGCTAGCAGCACAGATCGTCGGATAATTGATAAGACAG TTTTAGGGAATGGACAGACCTTCGTTGGAAGCTCTGTTAATTCTTTTGCACTAAATGGAACAAAAATCCCTCTGATTTATGGAAAAGCTGTCACGAGTAA TTGCACCGAGGATGATGCTTGGTCTTGCTTTAATAATTGTATGAACAGTAGCTTAGTGAAGGGAAAGATTGTCATATGTGATATGACAGATGCATCAGTG ACAGATGAAGCTTTTAGGGCCAGGGCCCTTGGCTCAATTATGTTGAATGACACATTTGAAGATGTTTCCAATGTAGTGCCCTTACCTGCATCTAGTTTGA ACCCTCATGACAGCGATTTGGTGATGTCCTACTTGAAATCTACAAAAAATCCTCAAGCAACGATATTGAAAAGTGAAATTACAGAACATAATACGGCTCC TGTAGTTGCTTCCTTCTCATCACGCGGTCCAAATAACATTGTACCTGAGATTTTGAAGCCGGATATAAGCGCCCCAGGAGTAGAAATCTTGGCTGCGTAT TCTCCAGTTGCTTCTCCATCAGTTAATGCTGATGATAAGAGGTCTGTGAAGTATAACGTAGTGTCTGGGACCTCCATGTCTTGTCCACATGTTGCTGGTG CTGCTGCTTATGTTAAATCATTTCATCCAAATTGGTCTCCTTCAGCCATCACATCTGCTCTAATGACCACTGCTTTGCCTATGAACACTGCCAAGCATGC AGATGCTGAATTTGGATATGGAGCAGGCCACATAAACCCGATAAAAGCTGTAGATCCTGGTTTAGTGTATGAAGCTACCAGAGACGATTATATAAGAATG CTGTGCAGTATGAATAATACTCTTTTCAGTAAATGTCCGCAGCACATTGAAGGATCTCCAAAGGATCTGAATTATCCTTCAATGGCAGTTCGAGTTGAAG AAAACAGGGCTTTCACAGTTAAATTTCCAAGAACAGTCAGAAATGTTGGACTCGCCAAGAGTTCATACAAATCAAACATCACAACAGGTTCTCAGATTAA TGTTATGGTGGAGCCAAGCATTCTGTCGCTCAAGTCGGTGGATGAGAGGCAATCATTTGTTGTCACAGTGGCTGGGAAAGGATTGCCAGCAAATTCCATG GTATCTTCATCACTGGTTTGGAATGATGGCACGCATAGTGTGAGAAGTCCCATTGTGGTTTACACAATTAAACCTTCAAACTGA
AA sequence Show only first row Show all	>Potri.009G037900.2 pacid=42770828 polypeptide=Potri.009G037900.2.p locus=Potri.009G037900 ID=Potri.009G037900.2.v4.1 annot-version=v4.1 MAGIFSSLSSYCILLVFIIVADLSLCTAQNDKQVYIVYMGSLPTGEYSPTSHHLSLLEEIVEGRSADGALVRSYNRSFNAFAARLSHAEVERISGLKEVV SVFPSRRSQLLTTRSWDFMGFPENVKRNPTVESNIIIGVIDSGIWPESESFADKGFGPPPAKWKGTCAGGKNFTCNNKIIGARVEFTSGAEATARDTEGH GSHTASTAAGNTVSGANFYGLAQGNARGAVPSARIAVYMACEEFCDDHKILAAFDDAIADGVDIITISIAKDVPFPYENDTIAIGAFHAMEKGILTVQAA GNSGPDPFTVSSHAPWIISVAASSTDRRIIDKTVLGNGQTFVGSSVNSFALNGTKIPLIYGKAVTSNCTEDDAWSCFNNCMNSSLVKGKIVICDMTDASV TDEAFRARALGSIMLNDTFEDVSNVVPLPASSLNPHDSDLVMSYLKSTKNPQATILKSEITEHNTAPVVASFSSRGPNNIVPEILKPDISAPGVEILAAY SPVASPSVNADDKRSVKYNVVSGTSMSCPHVAGAAAYVKSFHPNWSPSAITSALMTTALPMNTAKHADAEFGYGAGHINPIKAVDPGLVYEATRDDYIRM LCSMNNTLFSKCPQHIEGSPKDLNYPSMAVRVEENRAFTVKFPRTVRNVGLAKSSYKSNITTGSQINVMVEPSILSLKSVDERQSFVVTVAGKGLPANSM VSSSLVWNDGTHSVRSPIVVYTIKPSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	0	1
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	1.73	0.9289	Pt-SEC14.2
					Potri.006G276750 [exp]	2.44	0.9198
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	2.44	0.9208
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.010G159300 [exp]	4.00	0.8785	GRF12.1
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	4.47	0.8644
					Potri.003G089201 [exp]	5.74	0.8613
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	7.48	0.9024
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	8.36	0.8820
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.001G032800 [exp]	9.48	0.7282
AT2G34580			unknown protein		Potri.004G132600 [exp]	9.79	0.8585

Compare expression of checked genes

Potri.009G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.