Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46850 793 / 0 Subtilase family protein (.1) AT3G46840 782 / 0 Subtilase family protein (.1) AT5G59100 764 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 761 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59190 747 / 0 subtilase family protein (.1) AT5G58840 747 / 0 Subtilase family protein (.1) AT5G59090 744 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 714 / 0 Subtilase family protein (.1.2) AT5G58820 709 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 706 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037900 [exp] 778 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 657 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 655 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 626 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196700 [exp] 597 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 562 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 550 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 532 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G145600 [exp] 477 / 5e-159 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016482 [exp] 745 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10040750 [exp] 731 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016484 [exp] 709 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 634 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 622 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040751 [exp] 619 / 0 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 617 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004686 [exp] 598 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 590 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 589 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G038001.2 pacid=42771083 polypeptide=Potri.009G038001.2.p locus=Potri.009G038001 ID=Potri.009G038001.2.v4.1 annot-version=v4.1 ATGGCGCAGTACGGATCTATCCCGCTCTGTATTCTTACACTAAGCATTAGTGTATTGTTTTGCAGTGCTACTGGTGATGATAGAAAGGAATACATAGTGT ATATGGGGTCACTTCCAGAGGGTGAATACTCGCCATCATCTCACCACCTCAGTTTGCTTCAAGAAGTTGTTAAGGACAGCTCTTCTGAAAATGTCCTTGT TAGAAGTTACAAAAGGAGTTTCAATGGATTTTCTGCAAAGCTCACAAGTGAGGAGGCACAAAAGCTAGTAAGTAAGAAGGAAGTGGTCTCTATTTTTCCG AGTACAACTCTCCAACTTCAAACAACAAGATCTTGGGACTTTATGGGTTTCAATGTGACTGCAAGTGGAAAACGAGGCACTCATAGTGATATTATTGTTG GTGTCATTGATACTGGAATTTGGCCAGAATCAGAGAGTTTTAATGATGATGGTTTCGGCCCTCCTCCCAGGAAGTGGAGGGGTGCCTGCGAAGGTGGCGA AAACTTCACTTGCAACAACAAAATCATTGGAGCTAGACATTATTCATTTTCGTCTGCAAGGGATGATCTAGGCCATGGATCACATACCGCCTCTACAGCA GCTGGGAACATAGTAAAGAAAGCTAGCTTTTATGGACTGGCACAAGGTACTGCCAGAGGAGGGGTACCCTCAGCGAGAATTTCTGCATATAAAGTATGTG GTCCAGGTTCATGCCAATCAAGCGATATCCTTTCCGCATTTGATGATGCTATTGCTGATGGAGTTGATATTATAACAATCTCAATTGGAGGAAACCAAGC ACAAGAATTTGATACTGATGTCATTGCAATTGGTGGTTTTCATTCAATGGCGAAAGGAATTCTTACTTTACAATCTGCAGGAAATGATGGTCCTGTATCA GGATCAGTGGCAAGTGTGGCACCATGGATATTCACTGTTGCTGCAAGCAGCACGGATCGTCGGATCATAGACAAAGTTGTTCTTGGGAATGGAAAGACAT TAGTCGGGAATTCTGTTAATTCTTTCAGTCTAAAAGGAAAAAAGTTTCCTCTGGTATACGGTAAGGGTGCATCAAGAGAATGCAAGCATCTTGAAGCAAG CCTTTGCTATAGCGGCTGTTTAGACAGAACTTTAGTGAAGGGAAAGATTGTACTGTGTGATGATGTGAATGGAAGAACTGAGGCTAAAAGAGCTGGAGCT CTTGGCGCGATCCTTCCAATTAGTTTTGAGGATATTTCCTTTATCTTACCTTTGCCTGGATTGAGTTTAACAGAAGACAAACTTAATGCTGTCAAGTCAT ATCTGAATTCCACGAAGAAACCTTCAGCAAACATATTAAAAAGTGAAGCCATTAAGGATAATGCTGCACCTGAAGTTGCTTCTTTCTCTTCTCGTGGTCC AAATCCCATCATATCAGATATTTTGAAGCCAGATGCCAGTGCCCCAGGTGTAGATATCTTGGCTGCATTCCCACCTGTTCTTTCACCTACAGACGACACT GCAGACAAGAGGCATGTTAAGTACAGTGTGATGTCTGGAACCTCCATGGCTTGCCCTCATGCTGCCGGTGTAGCGGCTCATGTTAAAGCAGCTCACCCTG ATTGGTCTGCTTCAGCTATTAAATCTGCTATTATGACTACTGCTTGGCCCATGAATGTTACTGAAAGATCAGAGGGAGAATTTGCTTTCGGATCTGGGCA TGTAAATCCAGTAACAGCCATTCACCCTGGACTTGTTTATGAAACACAGAAGAGTGACTACATACAACTGTTCTGTGGCCTGGGATATACTGCAGAGAAA ATCCGGCAAATCTCAGGAGACAACAGCAGCTGTAGTAAGGCCGCTAGAAACACCCTGCCAAGGGATTTGAATTACCCTTCAATGGCAGCTAAAGTTGCAG TGGAGGAGTCCTTCACAATTAAATTTCATAGAACAGTTACAAATGTTGGCAATGCAAACTCAACCTACAAGGCAAAAATCTTCTCACGTTCATCACTCAA GATCAAAGTTGTGCCTGAAGCTCTCTCCTTCAAGTCCTTGAAAGAGAAGAAGTCGTTCGCTGTAACTATTGTTGGTCGAGATTTGACATATAACTCAATT CTGTCTGCATCGTTGGTGTGGTCTGATGGTTCTCACAGCGTGAGGAGTCCAATTGTTGTTTACGGAGGGGGAGATGAATTTACAACTCCATCAGCTTATA ATTAG
AA sequence Show only first row Show all	>Potri.009G038001.2 pacid=42771083 polypeptide=Potri.009G038001.2.p locus=Potri.009G038001 ID=Potri.009G038001.2.v4.1 annot-version=v4.1 MAQYGSIPLCILTLSISVLFCSATGDDRKEYIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQKLVSKKEVVSIFP STTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESFNDDGFGPPPRKWRGACEGGENFTCNNKIIGARHYSFSSARDDLGHGSHTASTA AGNIVKKASFYGLAQGTARGGVPSARISAYKVCGPGSCQSSDILSAFDDAIADGVDIITISIGGNQAQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVS GSVASVAPWIFTVAASSTDRRIIDKVVLGNGKTLVGNSVNSFSLKGKKFPLVYGKGASRECKHLEASLCYSGCLDRTLVKGKIVLCDDVNGRTEAKRAGA LGAILPISFEDISFILPLPGLSLTEDKLNAVKSYLNSTKKPSANILKSEAIKDNAAPEVASFSSRGPNPIISDILKPDASAPGVDILAAFPPVLSPTDDT ADKRHVKYSVMSGTSMACPHAAGVAAHVKAAHPDWSASAIKSAIMTTAWPMNVTERSEGEFAFGSGHVNPVTAIHPGLVYETQKSDYIQLFCGLGYTAEK IRQISGDNSSCSKAARNTLPRDLNYPSMAAKVAVEESFTIKFHRTVTNVGNANSTYKAKIFSRSSLKIKVVPEALSFKSLKEKKSFAVTIVGRDLTYNSI LSASLVWSDGSHSVRSPIVVYGGGDEFTTPSAYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46850			Subtilase family protein (.1)		Potri.009G038001 [exp]	0	1
AT5G05800			unknown protein		Potri.015G012100 [exp]	5.09	0.9572
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	17.32	0.9531
					Potri.013G148950 [exp]	22.80	0.9201
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.003G081066 [exp]	24.69	0.9519
AT5G05800			unknown protein		Potri.001G238000 [exp]	24.73	0.9329
AT5G05800			unknown protein		Potri.007G118701 [exp]	30.16	0.9505
AT1G17060		SHK1, CHI2, SOB...	SUPPRESSOR OF PHYB-4 7, SHRINK...		Potri.017G000600 [exp]	30.24	0.8862
					Potri.003G081133 [exp]	33.66	0.9484
					Potri.013G071200 [exp]	34.07	0.9495
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.004G040700 [exp]	40.81	0.9474

Compare expression of checked genes

Potri.009G038001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.