Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78400 357 / 3e-121 Pectin lyase-like superfamily protein (.1) AT1G17150 338 / 5e-114 Pectin lyase-like superfamily protein (.1) AT2G15450 335 / 9e-113 Pectin lyase-like superfamily protein (.1) AT2G15470 331 / 5e-111 Pectin lyase-like superfamily protein (.1) AT1G43080 331 / 6e-111 Pectin lyase-like superfamily protein (.1) AT1G43090 331 / 1e-110 Pectin lyase-like superfamily protein (.1) AT2G15460 330 / 1e-110 Pectin lyase-like superfamily protein (.1) AT2G33160 332 / 3e-108 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G43100 325 / 5e-108 Pectin lyase-like superfamily protein (.1) AT2G40310 320 / 1e-106 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377700 [exp] 457 / 1e-160 AT1G78400 295 / 4e-97 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 322 / 4e-107 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 313 / 4e-104 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 313 / 7e-104 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.007G035800 [exp] 311 / 3e-103 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 310 / 4e-103 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 310 / 4e-103 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 310 / 4e-103 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 310 / 6e-103 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042483 [exp] 357 / 2e-121 AT2G33160 298 / 6e-98 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) Lus10026183 [exp] 355 / 2e-120 AT2G33160 305 / 2e-100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) Lus10026184 [exp] 351 / 4e-119 AT1G78400 310 / 6e-103 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 312 / 1e-99 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 296 / 1e-97 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 294 / 9e-97 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 280 / 3e-91 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 273 / 2e-88 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 271 / 6e-88 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 270 / 1e-86 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.009G038100.1 pacid=42772380 polypeptide=Potri.009G038100.1.p locus=Potri.009G038100 ID=Potri.009G038100.1.v4.1 annot-version=v4.1 ATGGGTTTTACTCGGATTCTGTTCTTGACACTGCTTTTTGTTTGGGCTGCCGATGTTCAATGTCAAAACGTTAGGATTTTCAACGTGAAGAAATATGGTG CAATCCCTGATGGCAAGACTGAGAATAGCAAGGCATTCTTGGAAGCATGGAAAAATGCGTGTAAATGGAATGGAAAGGCTGTGGTTTTGGTGCCAGCAGG AACATACCTGCTAGACTCGGTGAAATTTGAGGGCGAATGCAAGGGTTACATGATATTTAAGGTGAAAGGGAATGTAATGGCCGCAAGCAAACTGAAGGAT ATTAACCAATGGATTACTTTCAAATATGTTAATGGCTTAACTGTGGCCGGTCGTGGAACCTTCGATGGCCAAGGATACAAGGTTTGGCCTTGTAAGATAA ACGGACGATGCCAAACTCTTCCTATATCATTAAGGCTTGAATTCATCAGAAATGGGAAACTGCAAAACATAAGATCAATCAACAGCCAAAATGCCCATGT TTCCATCTTTGCCAGCAGCAACTTGAATATCACTAATGTCAAGTTGTCTGCTCCTCAAGATAGCCCTAATACTGATGGGATCAAGATTAGTTCTTCAGAA GAAATCAGGATTACACGCACATCAATCAGTACAGGAGATGATTGTGTTGCCATACTCAATGGGAGTAAAAACACTCACATTTCTCAAGTTTTCTGTGGCC CTGGACATGGAATCAGTGTTGGGAGTATGGGAGGGAATACACTTATTGATAATAAAGACATTGTGGTGGGGTTGGCCGTGACGAACTCCACTTTTACCAA TACCAGCAATGGTTTAAGAATCAAAACATGGGCATCTCGCTATGAAGGTCTTGCTTCTGGTTTCACTTACGAAGACATCATAATGAACGACGTCGAACAT CCCATTATTATTGATCAGCAATATTGCCCTAGTTCTTCCTGTGATTCCAAGACTGCTTCACGTATTCAAATCAGGGATATTACATACAGCAACATTAGGG GTACTTCGAAGTCGAAGGCAGCAGTGACATTAAATTGCAGCAGCATTGTTCCATGCAAGAATATAGTGCTGAAGGATATCAGATTGGTGTATACAGGAAA TGAAGGTCCTGCAAGTTCAATATGTTCTAATGTCCATGGCTACTCTTATGGCCTTCAAAACCCACCCCCATGCTTTCGCTCGGCTTAG
AA sequence Show only first row Show all	>Potri.009G038100.1 pacid=42772380 polypeptide=Potri.009G038100.1.p locus=Potri.009G038100 ID=Potri.009G038100.1.v4.1 annot-version=v4.1 MGFTRILFLTLLFVWAADVQCQNVRIFNVKKYGAIPDGKTENSKAFLEAWKNACKWNGKAVVLVPAGTYLLDSVKFEGECKGYMIFKVKGNVMAASKLKD INQWITFKYVNGLTVAGRGTFDGQGYKVWPCKINGRCQTLPISLRLEFIRNGKLQNIRSINSQNAHVSIFASSNLNITNVKLSAPQDSPNTDGIKISSSE EIRITRTSISTGDDCVAILNGSKNTHISQVFCGPGHGISVGSMGGNTLIDNKDIVVGLAVTNSTFTNTSNGLRIKTWASRYEGLASGFTYEDIIMNDVEH PIIIDQQYCPSSSCDSKTASRIQIRDITYSNIRGTSKSKAAVTLNCSSIVPCKNIVLKDIRLVYTGNEGPASSICSNVHGYSYGLQNPPPCFRSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78400			Pectin lyase-like superfamily ...		Potri.009G038100 [exp]	0	1
AT1G34580			Major facilitator superfamily ...		Potri.002G096000 [exp]	3.16	0.9345	HT1.2
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.017G053801 [exp]	12.48	0.9530
AT5G05800			unknown protein		Potri.003G192350 [exp]	14.35	0.7533
					Potri.004G018900 [exp]	16.73	0.8277
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	20.78	0.7491
AT5G64790			O-Glycosyl hydrolases family 1...		Potri.007G078900 [exp]	21.42	0.7067
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.019G014407 [exp]	22.84	0.6930
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.013G118200 [exp]	22.97	0.8946
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025800 [exp]	26.98	0.7762
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	30.39	0.8809

Compare expression of checked genes

Potri.009G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.