Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59080 104 / 2e-29 unknown protein AT5G02020 96 / 7e-26 SIS Salt Induced Serine rich, unknown protein AT2G39855 74 / 3e-17 unknown protein AT3G55646 70 / 1e-15 unknown protein AT5G05965 41 / 6e-05 unknown protein AT3G46880 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092400 [exp] 132 / 7e-40 AT5G02020 122 / 2e-36 Salt Induced Serine rich, unknown protein Potri.008G061700 [exp] 116 / 8e-34 AT3G55646 75 / 7e-18 unknown protein Potri.010G196400 [exp] 103 / 1e-28 AT2G39855 86 / 4e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021101 [exp] 91 / 3e-23 AT5G02020 117 / 1e-33 Salt Induced Serine rich, unknown protein Lus10017209 [exp] 55 / 1e-09 AT3G09270 93 / 5e-23 glutathione S-transferase TAU 8 (.1) Lus10040250 [exp] 39 / 0.0007 AT2G39855 64 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G038300.2 pacid=42771998 polypeptide=Potri.009G038300.2.p locus=Potri.009G038300 ID=Potri.009G038300.2.v4.1 annot-version=v4.1 ATGGACAGTAACAAGCAAGGGGCTTGTTTTTCTTCTTCTTCTTCTTCATTCACAGCCGATCTTTTTGGCACCACTGAATCAGCACCAGTATCTTCAGCTG GGATTTTTGCTTCTATGTTTCCACCTCCGTCTACGGTTGTAGGGAGGAAGTCTTCAGGCTCTGAGGTGACAGGATCTTGGCAAAAACAGTCCTATGGAAA TCAAGCGTGGTACCCCAAACAAGGATCTCCAGCCAATAGCCAGGCTGCAAGCTATAGCATGCCAGACAAGGACAGAAATTCAGTTATCCAGGAAGAAAGA GTGGAACCATGTCATCTAAGTTCATCCCTTTACTACGGTGGACAAGAAAACTACTCTCAATCCCCAAGTACTCAAATGGCTGGATCATATCCCATATTCA AGAAAGATGGGGGAGAAGATGATCCTAACGGCAGCAACCCTCACAGTGCTTCCAGAGGAAATTGGTGGCAAGGTTCGCTTTATTATTAG
AA sequence Show only first row Show all	>Potri.009G038300.2 pacid=42771998 polypeptide=Potri.009G038300.2.p locus=Potri.009G038300 ID=Potri.009G038300.2.v4.1 annot-version=v4.1 MDSNKQGACFSSSSSSFTADLFGTTESAPVSSAGIFASMFPPPSTVVGRKSSGSEVTGSWQKQSYGNQAWYPKQGSPANSQAASYSMPDKDRNSVIQEER VEPCHLSSSLYYGGQENYSQSPSTQMAGSYPIFKKDGGEDDPNGSNPHSASRGNWWQGSLYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59080			unknown protein		Potri.009G038300 [exp]	0	1
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	1.73	0.8295
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Potri.002G202300 [exp]	3.16	0.8236	SUS2.2
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	3.16	0.8293
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.008G080100 [exp]	3.31	0.7952
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.013G061200 [exp]	4.00	0.8254
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	4.24	0.8004
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	4.58	0.8254
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	6.00	0.8123
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020700 [exp]	8.36	0.8053
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	8.94	0.7699

Compare expression of checked genes

Potri.009G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.