Plant FIBer expression Database

Potri.009G038600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59050 112 / 2e-28 unknown protein
AT3G54000 59 / 2e-09 unknown protein
AT4G02830 44 / 5e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G195800
[exp]
85 / 6e-18 AT3G54000 94 / 3e-21 unknown protein
Potri.016G105000
[exp]
84 / 2e-17 AT3G54000 73 / 4e-14 unknown protein
Potri.006G093000
[exp]
81 / 1e-16 AT3G54000 79 / 9e-16 unknown protein
Potri.008G062200
[exp]
75 / 9e-15 AT2G39870 90 / 9e-20 unknown protein
Potri.002G053700
[exp]
65 / 4e-12 AT4G02830 99 / 4e-26 unknown protein
Potri.005G208800
[exp]
60 / 2e-10 AT4G02830 99 / 4e-26 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001433
[exp]
96 / 7e-22 AT5G59050 80 / 9e-17 unknown protein
Lus10001626
[exp]
82 / 3e-17 AT5G59050 77 / 4e-16 unknown protein
Lus10021105
[exp]
76 / 4e-15 AT3G54000 90 / 8e-20 unknown protein
Lus10016465
[exp]
75 / 4e-15 AT3G54000 56 / 8e-09 unknown protein
Lus10042573
[exp]
61 / 2e-10 AT4G02830 66 / 2e-13 unknown protein
Lus10040247
[exp]
54 / 8e-08 AT2G39870 100 / 9e-24 unknown protein
Lus10014664
[exp]
51 / 4e-07 AT4G02830 74 / 2e-16 unknown protein
Lus10004675
[exp]
50 / 1e-06 AT2G39870 100 / 1e-23 unknown protein
Lus10015768
[exp]
47 / 7e-06 ND 43 / 8e-05
PFAM info
Representative CDS sequence
>Potri.009G038600.2 pacid=42771539 polypeptide=Potri.009G038600.2.p locus=Potri.009G038600 ID=Potri.009G038600.2.v4.1 annot-version=v4.1
ATGGCTGTTGACCTAAACAACAGGGATTCATTATTCTTGCCCTCCCAATATAATCATGCCGAGGAGAACACCATTCTCGCTGTGGACAATAAAACCACTA
ACCAAAACGGGTCCACGTCCTTGGCTTCATCTGATTTTGGGTCTGCCCTGAGCTCACCAACTGAATCAGAGCTTGGTTCAACTGAGTCGGAAAGTGACCA
AGACGACGATTACATTGCTGAGCTGTCTCGTCAGATGGCTCATCACATGCTCCAAGATGATGATCATGAAAGACATGAAAAGACATGGAGTCTTGCTGGC
TGGCCACAATCAACAGCATGGTCAGAGTTGGGCTCGAGCCAAGAAGAGGAGACCGTGGTGGTGAACAAGTTTGAGAAGTTCAAGATCAAAGAAGAGGAAG
AGATTCACAAGTATGCCAATAACGAGGGATGTCTAAGCACTTCGCTTAAAACCCATTCAGTCCTTTCTACTGTCAGGGAACCTGAAATTTCCCCTGCCGA
TCAGTTTCAGTCTAAGCAAGCTCTTATTGAGAATCAAATAAAGTTCTATAAGCTCAAAAAATCAGAGCAGATTATGAAGCAACAAGAGTCTCTATATGGG
GCAAAACGGTCCAATTGGCATAAACAAAACGACCCCAGACGACAAGTTAAGCAGTTTCAAAGCAAAGGGAGAGCTCGTGGTGGGCAGTTTACTAGTCATT
ACGGGCAAAAGGTGTCATGGGCTAATCTACAACAACAACATGGAACCGGATCAGAGATGAGAGCAGTTTTCCTTGGTGATTCGTGTCTAAGAAGCGGGTC
TGGTGGTGGCACGGGGGTGTTCTTGCCTAGAGGTATCGGCAATACTTCCGGGTCACAAAAGAAACCAGGTTGTTCAACTGTTCTTATACCAGCGAGAGTA
GTTCAAGCGCTGAAACTCCATTTTGACAAAATGGGGGTTGCATCAAGATCCAATGGTGCTATTCTCCCTATTCAGCACGATGCTTTGAGTGGTGATGTGA
GATGTGGCCTGCAATTACCGCAAAGGATGAGCCAGTCTCCAGCGATGCCGGCAATAAATAGTCATCAAGGAACCGGTTTGCCTCAGGAATGGCCGTACTG
A
AA sequence
>Potri.009G038600.2 pacid=42771539 polypeptide=Potri.009G038600.2.p locus=Potri.009G038600 ID=Potri.009G038600.2.v4.1 annot-version=v4.1
MAVDLNNRDSLFLPSQYNHAEENTILAVDNKTTNQNGSTSLASSDFGSALSSPTESELGSTESESDQDDDYIAELSRQMAHHMLQDDDHERHEKTWSLAG
WPQSTAWSELGSSQEEETVVVNKFEKFKIKEEEEIHKYANNEGCLSTSLKTHSVLSTVREPEISPADQFQSKQALIENQIKFYKLKKSEQIMKQQESLYG
AKRSNWHKQNDPRRQVKQFQSKGRARGGQFTSHYGQKVSWANLQQQHGTGSEMRAVFLGDSCLRSGSGGGTGVFLPRGIGNTSGSQKKPGCSTVLIPARV
VQALKLHFDKMGVASRSNGAILPIQHDALSGDVRCGLQLPQRMSQSPAMPAINSHQGTGLPQEWPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59050 unknown protein Potri.009G038600
[exp]
0 1
AT3G58030 RING/U-box superfamily protein... Potri.006G193600
[exp]
1.00 0.9229
AT1G46768 AP2_ERF RAP2.1 related to AP2 1 (.1) Potri.014G025200
[exp]
4.00 0.9033 DREB36,DREB1.2
AT4G23010 ATUTR2, UTR2 UDP-galactose transporter 2 (.... Potri.001G111000
[exp]
4.58 0.8940
AT5G22080 Chaperone DnaJ-domain superfam... Potri.009G016700
[exp]
4.89 0.8915
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G014401
[exp]
5.47 0.8876
AT1G17130 Family of unknown function (DU... Potri.011G096100
[exp]
8.00 0.8890
AT2G36220 unknown protein Potri.016G079500
[exp]
9.00 0.8885
Potri.003G154301
[exp]
9.94 0.8690
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.013G025000
[exp]
10.09 0.8896 Pt-HAP5.3
AT3G47940 DNAJ heat shock family protein... Potri.015G066100
[exp]
10.58 0.8896

Potri.009G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.