Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) AT5G59590 330 / 1e-104 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 327 / 4e-103 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT2G45100 318 / 3e-98 Cyclin/Brf1-like TBP-binding protein (.1) AT3G46700 306 / 2e-95 UDP-Glycosyltransferase superfamily protein (.1) AT3G46680 302 / 8e-94 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 300 / 6e-93 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46650 295 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) AT3G46690 295 / 7e-91 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 292 / 6e-90 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246100 [exp] 947 / 0 AT3G09360 419 / 8e-140 Cyclin/Brf1-like TBP-binding protein (.1) Potri.001G245900 [exp] 349 / 2e-111 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.010G195500 [exp] 316 / 5e-99 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 311 / 3e-97 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 308 / 5e-96 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G039300 [exp] 281 / 2e-85 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.008G062400 [exp] 211 / 1e-59 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.005G073766 [exp] 210 / 2e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 210 / 2e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038957 [exp] 493 / 2e-165 AT3G09360 348 / 8e-113 Cyclin/Brf1-like TBP-binding protein (.1) Lus10040725 [exp] 339 / 9e-108 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 337 / 1e-106 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 329 / 8e-104 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 314 / 4e-98 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 297 / 1e-91 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 296 / 1e-90 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 290 / 7e-89 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 254 / 1e-75 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10004673 [exp] 216 / 3e-65 AT3G11340 236 / 1e-76 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00382 [poplar] [flax] TFIIB Transcription factor TFIIB repeat CL0065 [poplar] [flax] PF07741 [poplar] [flax] BRF1 Brf1-like TBP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G039100.10 pacid=42771100 polypeptide=Potri.009G039100.10.p locus=Potri.009G039100 ID=Potri.009G039100.10.v4.1 annot-version=v4.1 ATGAAAAATTTCTTTAAATTAATAGGTAATGCACGAGATGTAAGAAGGTCTTCAGCAATCGTTTACAATACAATGGACTGCCTTGAAGGGTCATCGTTAG CAAAGCTTCAACAACACTGCCATGTTCCAATCTTTGCAATAGGACCGATTCACAAGATTGTTCCTGCACCATCCTGTAGCTTACTAGAAGAGGACACTAA CTGCATGTCATGGCTTGACAGGCAAGCTCCGAGCTCGGTCATCTATGTAAGTCTAGGAAGTTTAGCTTCCATGAATGAGAAAGACATACTAGAAATGGCC TGGGGTTTGGCAAATAGCAAACAACCCTTCTTGTGGGTGGTTCGACCTGGCTCAGTACATGGTTCAGAACGGGCTGAGTCATTGCCTGAGGGATTCAGAG AAATTGCTGGAGAGAAAGGTCGAGTTGTGAAATGGGCACCGCAAAAAGAAGTTTTGGCACATAATGCAGTAGGAGGGTTTTGGAGCCACTGTGGCTGGAA CTCATTGCTTGAAAGTATATCTGAAGGGGTTCCGATGATATGCAGACCAAGCTTTGGGGATCAGAAGGTTACAGCTAGGTATGTAAGTCAAGTATGGAGA GTAGGTCTGCATTTGGAGGATGAATTGGAGAGGGGAGAAATAGAGAGTGTTATTACAAGGCTGATGGTTGATAAAGAGGGGGACGAGATGAGGCAGAGGG CAATGGACTTGAAGGAGAAAGCAGAACTTTGCATTAGAACTGGTGGTTCATCCTATAATTCCTTGAACAAGTACACAATGAGGTCTTGTGGCTCTTGTCG AGAAAAGGTTCGTGCATATTATGACGAAAATGGCATCGTGTCATGTAGTCGCTGTGGGAAAGTTCTGGAGTTCAGTTATCTTTCATCTGAAGCCTCTTTT GTACAAACTAGGTCGGGGGAGAGTCATGTGGCAGGTTCGTTTGTTAGGTCTGTTGAAAGCGAAAACGCTTCACGGGAGAGGTTGTATGAAAGAGCACGTG ATGACATGCTAAACATAAAAAATGGCTTAGGCATGGGTGAAAATCTTGGCATAGTTAACCAAGCTATGGTGTATTACAGAATAGCAGTTGAACGGAATTT CACTAGGGGCCGTAGGACAGATCAAGTACAGGCTGCTTGTCTTTACATTGCATGTCGGGAAAACAGAAAACCATATCTTCTTATTGATTTTTCTATTTAC TTGCAGATAAATATTTATGTACTAGGTGCTGTATTTTTGCAGCTCTGCAAAGTTTTAAATCTTACCGAGCATGCCATTTGTCAGAAACTTCATGATCCTT CCATTTTCATACACAAATATACAGCTAGTTTATCAGGAGGAAAAAACAAGGAAATTTCTGATGATGCACTGACCATTATAGCAAGTATGAATTACCATTG GATACAGACAGGTAGAACGCCCAGTGCATTGTGGGGTGCAGCATTATATATATCTGCACTTTCACATGGCCTCAACTGCTCCAAATCTGACATCTTAAGG TTGGTGCATGTTTGCGGGAAAACACTGTCAAAGAGATTGGTTGAATTTGAGAATACAGAGTCTGGGAGCTTAACGATTGAGGAACTGAATGCAAAGGTGG AGGAACTGAAAGAAAGTTCATTGCCACGAAGAAATTTTGGGGAGCCATCTAGTTCAAAAGAGTTGCTATGTCAACACAAGGGTACAAATAGACCTTCTTT TGGATTTGGACTTTGTAAAGATTGCTATGCAATTGTTATAGGATTTGATGGAGGAACAGATCCTCCAGCTTTCCAAAATGCTGAGAGTCAAAGAATGAAA AAATCATCTATTAGACATAACTTTGCAAAAGAATTGAACAGCCAATGCGAGAGCAGAGATGAAGAAAGGCCAACACGCGAGCGTGAAAGTGCTGGAGCTG CTACGGGGCATTTAGCCAATGATTTTGATAAACTGCACGGTGTGGGTGATATGAGTTCTAAAGCTTTTGACGAGTCAGATGGCTTTTCTGATATTGATGA TGCTGAGGTTGATAGCTACCTGCATAACGAGGAGGAAAAACGTTACAAAAAAATCATTTGGGAAGAAATGAACCGAGAGTATCTTCAGGAACAGGCAGCC AAAGAAGCAGCCGCAGCGACTCTTAAGAAAGCTTGGGAGGAGAATTTCAAGAATTGCCCAGAGGACTTGCAAGCTGCAAAGAAACTTGATGCTGCAGTAA AAGCTGATTTAGCAAAATCTAAAAAGGAAATTCAACAAAAGCGAGCTTCTGAAGCTAGGAACTTAGCTCCTGCTAAATCTGCTGCAGAAGCTGTCCATCG AATGCTAACTAAGAAGAGACTCGGTTCGAAAATCAACTATGACGTGTTGGAGAAACTCTTTGAGGATTCTGAGGCCAAGGACGCCAAGAAACCGCGAACA GAATCACGTTCTGACTCTGCTGACAAGGTGCTCCATACAGACGGCAAAGATTGTCGATTAGATTATACGAATGAAAATGATGGTTTGGGGTCACTGGATG AAAACGAAGACGATGCTGTTGAAGAAACATGTGATTTTCTTTATTATGAAAATTGTTCTGATGATGACTATGGTAACAGTTTATGGTAA
AA sequence Show only first row Show all	>Potri.009G039100.10 pacid=42771100 polypeptide=Potri.009G039100.10.p locus=Potri.009G039100 ID=Potri.009G039100.10.v4.1 annot-version=v4.1 MKNFFKLIGNARDVRRSSAIVYNTMDCLEGSSLAKLQQHCHVPIFAIGPIHKIVPAPSCSLLEEDTNCMSWLDRQAPSSVIYVSLGSLASMNEKDILEMA WGLANSKQPFLWVVRPGSVHGSERAESLPEGFREIAGEKGRVVKWAPQKEVLAHNAVGGFWSHCGWNSLLESISEGVPMICRPSFGDQKVTARYVSQVWR VGLHLEDELERGEIESVITRLMVDKEGDEMRQRAMDLKEKAELCIRTGGSSYNSLNKYTMRSCGSCREKVRAYYDENGIVSCSRCGKVLEFSYLSSEASF VQTRSGESHVAGSFVRSVESENASRERLYERARDDMLNIKNGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAACLYIACRENRKPYLLIDFSIY LQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHKYTASLSGGKNKEISDDALTIIASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDILR LVHVCGKTLSKRLVEFENTESGSLTIEELNAKVEELKESSLPRRNFGEPSSSKELLCQHKGTNRPSFGFGLCKDCYAIVIGFDGGTDPPAFQNAESQRMK KSSIRHNFAKELNSQCESRDEERPTRERESAGAATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDSYLHNEEEKRYKKIIWEEMNREYLQEQAA KEAAAATLKKAWEENFKNCPEDLQAAKKLDAAVKADLAKSKKEIQQKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSEAKDAKKPRT ESRSDSADKVLHTDGKDCRLDYTNENDGLGSLDENEDDAVEETCDFLYYENCSDDDYGNSLW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.009G039100 [exp]	0	1
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.002G173600 [exp]	11.40	0.8621
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	20.39	0.8093	GCR1.1
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Potri.001G220500 [exp]	20.54	0.8553
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	24.18	0.8534	GAPDH.2
AT1G50060			CAP (Cysteine-rich secretory p...		Potri.009G083600 [exp]	32.71	0.8493
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.008G126700 [exp]	35.83	0.8455
					Potri.001G221051 [exp]	37.13	0.8450
AT5G13760			Plasma-membrane choline transp...		Potri.009G056301 [exp]	44.01	0.7770
AT4G18230			unknown protein		Potri.002G170700 [exp]	45.16	0.8404
AT5G47540			Mo25 family protein (.1)		Potri.003G055900 [exp]	50.07	0.8399

Compare expression of checked genes

Potri.009G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.