Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 155 / 2e-47 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 121 / 1e-34 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 120 / 2e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G34200 70 / 6e-15 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 63 / 3e-12 RING/U-box superfamily protein (.1) AT5G60580 59 / 3e-10 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 58 / 5e-10 RING/U-box superfamily protein (.1.2) AT3G09760 52 / 4e-08 RING/U-box superfamily protein (.1) AT2G01275 51 / 9e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246700 [exp] 273 / 1e-94 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 168 / 7e-53 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 164 / 3e-51 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 160 / 3e-50 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 152 / 6e-47 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 91 / 5e-22 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 78 / 4e-17 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G022900 [exp] 63 / 1e-11 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.001G452800 [exp] 61 / 2e-11 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016451 [exp] 209 / 3e-69 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 204 / 2e-67 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 142 / 2e-42 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 134 / 1e-39 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 131 / 9e-39 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 130 / 3e-38 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 130 / 8e-38 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 127 / 9e-37 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 91 / 2e-22 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 86 / 1e-20 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.009G039700.1 pacid=42771884 polypeptide=Potri.009G039700.1.p locus=Potri.009G039700 ID=Potri.009G039700.1.v4.1 annot-version=v4.1 ATGCTAGCTACACACTCTCCCCCTTTCGACAGAGACCACCATTTCAGTGCCAGCAGCAGTGAAATCTCACTGTCTGGCGAGATTGGGGCTCATAGGAACT CTTCTGTGTCAGATTGCTTGTCAGAGGTGGATTTGGAGAGTGGAGGTTTGGATATGGAGGTGCATTTGGACAACAAGACTCAGAGAGATTGTAGAATTTG CCACCTGGGTTTGGAGACTAGGGAGCAAGAATGTGGAGTTGCTATTGAGTTGGGGTGTTCTTGTAAGGGTGATTTGGGTGCTGCACACAAGAAATGTGCA GAGACATGGTTCAAGATCAAGGGTAACACGACATGTGAGATATGTGGTGCCACTGCACTTGGTGTTGCAGGCGAGCAGACAAATGAGGCACATAACGCTA GTGCGGCAGTCTTATCAGCACCAGCAGTTCCTCTTATCCTCGTGGAGACCCGAGCATTTTGGCATAGCCGCCGCCTTATGAATTTCTTGCTTGCCTGCAT GGTGATGGCCTTTGTCATTTCTTGGATCTTTCACTTTAAAGTCCTCTCTTGA
AA sequence Show only first row Show all	>Potri.009G039700.1 pacid=42771884 polypeptide=Potri.009G039700.1.p locus=Potri.009G039700 ID=Potri.009G039700.1.v4.1 annot-version=v4.1 MLATHSPPFDRDHHFSASSSEISLSGEIGAHRNSSVSDCLSEVDLESGGLDMEVHLDNKTQRDCRICHLGLETREQECGVAIELGCSCKGDLGAAHKKCA ETWFKIKGNTTCEICGATALGVAGEQTNEAHNASAAVLSAPAVPLILVETRAFWHSRRLMNFLLACMVMAFVISWIFHFKVLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.009G039700 [exp]	0	1
AT3G61920			unknown protein		Potri.014G104900 [exp]	1.73	0.8540
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	3.46	0.8330
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	4.24	0.7971
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	4.47	0.8193
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G202400 [exp]	5.74	0.7910
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	6.92	0.8078
AT3G14240			Subtilase family protein (.1)		Potri.003G071800 [exp]	8.48	0.7994
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	9.48	0.7794
AT3G56810			unknown protein		Potri.016G024600 [exp]	9.48	0.7941
AT4G33985			Protein of unknown function (D...		Potri.005G138100 [exp]	9.59	0.7630

Compare expression of checked genes

Potri.009G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.