Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52370 149 / 6e-47 unknown protein AT5G58990 147 / 7e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246800 [exp] 213 / 7e-72 AT5G52370 160 / 2e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016449 [exp] 159 / 2e-50 AT5G52370 169 / 2e-54 unknown protein Lus10040713 [exp] 157 / 1e-49 AT5G52370 167 / 6e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16053 [poplar] [flax] MRP-S34 Mitochondrial 28S ribosomal protein S34
Representative CDS sequence Show only first row Show all	>Potri.009G040100.1 pacid=42771647 polypeptide=Potri.009G040100.1.p locus=Potri.009G040100 ID=Potri.009G040100.1.v4.1 annot-version=v4.1 ATGGGCGGTGGCAGTCTCCTCACCAAGAGAGCAGCAGCAGCTACAAATCAAACACTAAGCTTATTCAAAAGACTATCACCATTCACCATCTTGCTAAAAA CCCTAACTACTTCTTCTTCTTCTTCTGCAGCCAGTGCTCAAAACCCTAAACATGAAACATCCATGCCGAAACGAAGAAAGAAGAAGAACCTCTTCGAGGT GGCTCAGTTCTTGCCTCAATGGGGTATCGGATACCACTTGGCTAAATCTCATTGGGCCAATGTATCTTACGAGATCACCAAAATCAATCTCTACAAGGAT GGTAGGCATGGAAAAGCATGGGGGATAGCTCACAAAGACGGATTACCAATTGCCGATGCTCCCAAGAAGATAAGTGGAGTTCACAAGCGATGCTGGAAGT ACATTCCAAGCTTAGCAAAATCAATTGAAAGCAAGAAAAGCTCACCAAAATCAACAGAAGCTGCTGCAAAGACCGAAGTTCAGGCAGCCTAA
AA sequence Show only first row Show all	>Potri.009G040100.1 pacid=42771647 polypeptide=Potri.009G040100.1.p locus=Potri.009G040100 ID=Potri.009G040100.1.v4.1 annot-version=v4.1 MGGGSLLTKRAAAATNQTLSLFKRLSPFTILLKTLTTSSSSSAASAQNPKHETSMPKRRKKKNLFEVAQFLPQWGIGYHLAKSHWANVSYEITKINLYKD GRHGKAWGIAHKDGLPIADAPKKISGVHKRCWKYIPSLAKSIESKKSSPKSTEAAAKTEVQAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52370			unknown protein		Potri.009G040100 [exp]	0	1
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Potri.016G115100 [exp]	1.00	0.8993
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G037100 [exp]	3.46	0.8242
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Potri.008G106900 [exp]	5.00	0.8525
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.008G146200 [exp]	5.09	0.7846
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	5.29	0.8643
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	5.47	0.8275
AT4G15790			unknown protein		Potri.010G024600 [exp]	5.47	0.8651
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	9.59	0.8701
AT3G13674			unknown protein		Potri.018G082800 [exp]	9.89	0.8362
AT1G61570		TIM13	translocase of the inner mitoc...		Potri.011G149800 [exp]	11.00	0.8263	TIM13.2

Compare expression of checked genes

Potri.009G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.