Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29560 808 / 0 ENOC cytosolic enolase (.1) AT2G36530 510 / 1e-179 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT1G74030 496 / 1e-173 ENO1 enolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116800 [exp] 515 / 0 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.015G131100 [exp] 514 / 0 AT2G36530 811 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.012G057500 [exp] 502 / 8e-176 AT1G74030 810 / 0.0 enolase 1 (.1) Potri.012G129300 [exp] 167 / 7e-49 AT2G36530 260 / 1e-85 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040711 [exp] 818 / 0 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 738 / 0 AT2G29560 713 / 0.0 cytosolic enolase (.1) Lus10015028 [exp] 512 / 3e-180 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 500 / 2e-175 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038904 [exp] 499 / 2e-175 AT2G36530 792 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 497 / 2e-174 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038963 [exp] 495 / 6e-173 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10027255 [exp] 488 / 3e-170 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10035579 [exp] 479 / 1e-167 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10008647 [exp] 425 / 2e-143 AT2G36530 687 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0256 [poplar] [flax] Enolase_TIM PF00113 [poplar] [flax] Enolase_C Enolase, C-terminal TIM barrel domain CL0227 [poplar] [flax] Enolase_N PF03952 [poplar] [flax] Enolase_N Enolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G040700.2 pacid=42771488 polypeptide=Potri.009G040700.2.p locus=Potri.009G040700 ID=Potri.009G040700.2.v4.1 annot-version=v4.1 ATGTCGGTGCAGGAATACCTAGACAAGCACGTGCTCTCTCGTAAAATCGAAGACGCCGTCAATGCCGCCGTCAGGGCCAAAACTCCCGATCCTGTTCTCT TCATATCAAATCACATGAGAAAAGCGGTTCCGTCAGTGATAACGAAAATAAAAGGGAGGCAGATCCTGGATAGCAGAGGAATTCCTACTGTTGAAGTTGA CTTGTTCACCAACAAAGGCAGCTTCCGTGCTTCTGTTCCTAGCGGTCATGTTACTGGCATGTATGAAGCTGTAGAACTGAGAGATGGGGACAAAGGAATG TATCTCGGAAACAGTGTGACTAGAGCTGTTAAGAACATTAATGAGAAGATATCTGAAGCACTGATTGGCATGGACCCGACACTTCAGTCTCAAATTGATC AGGCTATGATAGACTTGGACAAAACAGAAAAGAAGGGTGAACTTGGAGCAAATGCTATGTTAGCTGTGTCAATTGCTGCATGCAAAGCTGGAGCCGCTGA AAAGGAGGTTCCACTTTACAAACACATTTCTGATCTTTCCAGCAAAACCAACCCGACTCTTCCTGTCCCAGCCTTCACTGTCATAAGTGGTGGAAAACAT GCTGGGAACAATCTAGCCATTAAGGAAATCATGATTCTTCCAATTGGAGCCAGCACATTTGAGGAGGCACTACAAATGGGTTCCGAAACATACCATCATC TAAAGGCTGTTATAAAAGAAAAATATGGTGAACAAGGATGCAATGTTGGTGAAGATGGTGGTTTTTCTCCAAACTTATCCAGTGTTCAAGAAGGATTGAA TCTTGTTAAAGAGGCTATCAGCAGAACAGGGTACAGTGAGAAAATTAAGATGGCCATTGATGTCGCTGCTACCACCTTTTGCATAGGTACCAAGTATGAT TTGGACTACAAATTCCAAAATAAATCTGGGCAGAATTTCAAGTCAGGAGATGATATGATTAAGATGTACGAAGAACTATGTGCTGCGTACCCGATTGTTT CGATTGAAGATCCATTTGATAGGGAGGATTGGGAACATGTCAAGCGTTTCTCTGACCTTGGACTTTGTCAGGTTGTAGGGGATGACTTATTGATGTCAAA TCACAAACGTATTGAAAGAGCAATACATGAGTCCAGTTGCACTGCACTTCTTCTCAAGGTAAATCAGATTGGGACAGTAACAGAAGCCCTTGAAGTGGTG AAGCTGGCAAAGGATGCCCACTGGGGTGTGGTGGTATCTCATAGAAGTGGAGAAACAGAAGATTCTTTTATAGCTGATTTATCTGTTGGCCTTGCCATGG GTCAGATCAAAACAGGCGCTCCTTGCAGGGGAGAGCGACTAGCAAAATACAACCAGTTGCTTCGGATTGAGGAAGAACTGGGTGATCAAGCAGTTTATGC AGGTGAAGATTGGAGAGCAACCTGA
AA sequence Show only first row Show all	>Potri.009G040700.2 pacid=42771488 polypeptide=Potri.009G040700.2.p locus=Potri.009G040700 ID=Potri.009G040700.2.v4.1 annot-version=v4.1 MSVQEYLDKHVLSRKIEDAVNAAVRAKTPDPVLFISNHMRKAVPSVITKIKGRQILDSRGIPTVEVDLFTNKGSFRASVPSGHVTGMYEAVELRDGDKGM YLGNSVTRAVKNINEKISEALIGMDPTLQSQIDQAMIDLDKTEKKGELGANAMLAVSIAACKAGAAEKEVPLYKHISDLSSKTNPTLPVPAFTVISGGKH AGNNLAIKEIMILPIGASTFEEALQMGSETYHHLKAVIKEKYGEQGCNVGEDGGFSPNLSSVQEGLNLVKEAISRTGYSEKIKMAIDVAATTFCIGTKYD LDYKFQNKSGQNFKSGDDMIKMYEELCAAYPIVSIEDPFDREDWEHVKRFSDLGLCQVVGDDLLMSNHKRIERAIHESSCTALLLKVNQIGTVTEALEVV KLAKDAHWGVVVSHRSGETEDSFIADLSVGLAMGQIKTGAPCRGERLAKYNQLLRIEEELGDQAVYAGEDWRAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29560		ENOC	cytosolic enolase (.1)		Potri.009G040700 [exp]	0	1
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	2.64	0.8952
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	6.32	0.8801
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	6.70	0.8194
AT4G21895			DNA binding (.1)		Potri.004G017000 [exp]	7.54	0.8789
AT1G06660		JASON	JASON, unknown protein		Potri.002G057000 [exp]	18.00	0.8518
AT4G12540			unknown protein		Potri.013G040800 [exp]	19.44	0.8546
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.002G198700 [exp]	19.59	0.8570
AT4G12540			unknown protein		Potri.005G053300 [exp]	20.85	0.8603
AT2G47610			Ribosomal protein L7Ae/L30e/S1...		Potri.001G326400 [exp]	24.65	0.8607
AT1G68350			unknown protein		Potri.008G122700 [exp]	29.12	0.8444

Compare expression of checked genes

Potri.009G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.