Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05820 472 / 1e-169 Nucleotide-sugar transporter family protein (.1) AT3G11320 471 / 5e-169 Nucleotide-sugar transporter family protein (.1) AT5G04160 417 / 8e-148 Nucleotide-sugar transporter family protein (.1) AT3G10290 412 / 3e-145 Nucleotide-sugar transporter family protein (.1) AT1G12500 359 / 4e-124 Nucleotide-sugar transporter family protein (.1) AT1G77610 158 / 7e-46 EamA-like transporter family protein (.1) AT1G21870 156 / 4e-45 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G25400 114 / 2e-29 Nucleotide-sugar transporter family protein (.1) AT5G11230 112 / 2e-28 Nucleotide-sugar transporter family protein (.1) AT4G32390 109 / 3e-27 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247600 [exp] 525 / 0 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 481 / 4e-173 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 477 / 2e-171 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 409 / 1e-144 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 390 / 4e-137 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 384 / 7e-134 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 374 / 4e-130 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 157 / 1e-45 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 156 / 5e-45 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016446 [exp] 483 / 7e-174 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 471 / 1e-168 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 457 / 2e-163 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 454 / 5e-162 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 451 / 1e-160 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 406 / 4e-143 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 405 / 7e-143 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 308 / 2e-105 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 293 / 2e-98 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 169 / 3e-50 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.009G040800.1 pacid=42772694 polypeptide=Potri.009G040800.1.p locus=Potri.009G040800 ID=Potri.009G040800.1.v4.1 annot-version=v4.1 ATGAGTCGTTTATTTAGCCTCGGGCTGATTGCATCATGGTACTCCTCAAATATAGGAGTTTTGCTATTAAACAAATATTTGCTTAGCAACTATGGATTCA AGTACCCCATATTTCTCACTCTGTGTCATATGATGGCATGTTCATTGTTTAGTTATATTGCAATTTCATGGCTCAAGATTGTGCCTTTGCAGACCATGAG GTCAAAATCACAGTTTTTGAAGATCTCTGCTCTTGGGATCATTTTTTGTTCCTCTGTTGTGGCTGGAAATATATCTCTTCGATATCTTCCAGTATCGTTT AATCAGGCTATTGGGGCCACCACCCCATTTTTCACTGCAGTGTTTGCATATTTGATGACACTTAGAAGGGAAGGTTGGCTTACTTATGTTTCTCTCGTTC CTGTTGTTGCTGGTTGTGTCATTGCTAGTGGGGGGGAGCCGAGTTTTAATCTTTTCGGGTTCTTAATGTGTATCGGTGCTACGGCGGCACGTGCACTCAA GACTGTGGTTCAAGGGATTTTGCTATCCTCTGAAGGGGAAAGACTCCATTCTATGAACCTCTTAATGTATATGGCTCCGGTAGCAGTTGCAGTCCTTGTT CCTGCAGCTTATTTTATGGAGGGAGATGTGGTTGGAATCACAATTTCCCTAGCAAGGGATGATAAGAAATTCATATTCTATCTGATCTTCAATTCTTCTC TAGCATATCTTGTGAATTTGACCAACTTCTTGGTCACTAAACATACCAGTGCTTTGACGCTCCAGGTCCTGGGAAATGCAAAGGGAGCTGTTGCAGTGGT TATTTCAATTTTGATATTCCGGAATCCTGTTTCAGTGACTGGGATCTTTGGATACAGCATCACTGTGGCTGGGGTTGTTCTCTACAATGAGGCCAAGAAA AGGAGCAGGAACGATTGA
AA sequence Show only first row Show all	>Potri.009G040800.1 pacid=42772694 polypeptide=Potri.009G040800.1.p locus=Potri.009G040800 ID=Potri.009G040800.1.v4.1 annot-version=v4.1 MSRLFSLGLIASWYSSNIGVLLLNKYLLSNYGFKYPIFLTLCHMMACSLFSYIAISWLKIVPLQTMRSKSQFLKISALGIIFCSSVVAGNISLRYLPVSF NQAIGATTPFFTAVFAYLMTLRREGWLTYVSLVPVVAGCVIASGGEPSFNLFGFLMCIGATAARALKTVVQGILLSSEGERLHSMNLLMYMAPVAVAVLV PAAYFMEGDVVGITISLARDDKKFIFYLIFNSSLAYLVNLTNFLVTKHTSALTLQVLGNAKGAVAVVISILIFRNPVSVTGIFGYSITVAGVVLYNEAKK RSRND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	3.00	0.9664
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	3.46	0.9628
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	4.89	0.9409
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	7.74	0.9530	Pt-FLA14.3
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	8.06	0.9285	ATCSLD4.1
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	9.16	0.9413
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	10.48	0.9353
					Potri.015G001700 [exp]	11.31	0.9215
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	13.41	0.9355
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	14.45	0.9333

Compare expression of checked genes

Potri.009G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.