Plant FIBer expression Database

Pt-PCNA.1 (Potri.009G040900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PCNA.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29570 484 / 8e-176 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
AT1G07370 483 / 5e-175 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G247700
[exp]
505 / 0 AT2G29570 475 / 4e-172 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Potri.010G193950
[exp]
53 / 3e-09 AT1G07370 57 / 3e-11 proliferating cellular nuclear antigen 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005874
[exp]
386 / 3e-137 AT2G29570 389 / 3e-138 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Lus10001197
[exp]
336 / 8e-118 AT2G29570 343 / 1e-120 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Lus10038360
[exp]
108 / 4e-30 AT2G29570 109 / 9e-31 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Lus10038359
[exp]
0 / 1 AT2G29570 70 / 3e-21 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0060 DNA_clamp PF04139 Rad9 Rad9
Representative CDS sequence
>Potri.009G040900.1 pacid=42771143 polypeptide=Potri.009G040900.1.p locus=Potri.009G040900 ID=Potri.009G040900.1.v4.1 annot-version=v4.1
ATGTTGGAGCTGAGGCTGGTACAGGGATCTCTTCTTAAGAAAGTCTTAGAGTCCATCAAGGATCTGGTCAACGATGCAAACTTTGACTTCTCGTCCTCTG
GGTTCTCTCTCCAGTCCATGGATTCCAGCCACGTTGCCCTGGTGGCTCTACTCCTCAAATCGGAGGGTTTTGAGCACTACCGCTGCGACCGTAACACGTC
AATGGGCATGAATCTTGGTAACATGTCTAAGATGTTAAAGTGCGCTGGTAACGATGACATCATCACCATCAAAGGCGACGATGGGAGTGATACTGTCACT
TTCATGTTTGAAAGTCCCACACAGGACAAAATTGCTGATTTTGAGATGAAGTTGATGGACATTGATAGTGAGCACCTTGGAATTCCAGAGGCAGAATACC
ATGCTATTGTTAAGATGCCTTCAGCTGAGTTTGCTAGGATTTGTAAAGACCTTGCTAGCATTGGTGATACAGTTGTGATCTCTGTGACAAAGGAGGGTGT
TAAGTTCTCCACAAGAGGTGATATTGGAACTGCAAATATCGTCCTGAGGCAGAAAACCACTGTTGACAAGCCAGAAGATGCAACAGTCATTGAGATGAAT
GAGCCAGTGTCGATGACATTTGCACTGAGGTACATGAACTCCTTCACCAAGGCAACCCCACTGTCAAACACAGTTACAATCAGCATGTCTCCAGACCTGC
CTGTTGTGGTTGAGTACAAGATTGCTGAAATGGGCTATGTCAGATTCTACCTGGCTCCCAAGATGGAAGAGGATGAGCCTGAACCCGGAGCCTAA
AA sequence
>Potri.009G040900.1 pacid=42771143 polypeptide=Potri.009G040900.1.p locus=Potri.009G040900 ID=Potri.009G040900.1.v4.1 annot-version=v4.1
MLELRLVQGSLLKKVLESIKDLVNDANFDFSSSGFSLQSMDSSHVALVALLLKSEGFEHYRCDRNTSMGMNLGNMSKMLKCAGNDDIITIKGDDGSDTVT
FMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVKMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQKTTVDKPEDATVIEMN
EPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPEPGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29570 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL... Potri.009G040900
[exp]
0 1 Pt-PCNA.1
AT3G52630 Nucleic acid-binding, OB-fold-... Potri.006G211900
[exp]
3.46 0.8160
AT5G65360 Histone superfamily protein (.... Potri.005G233900
[exp]
10.19 0.8225
AT2G38620 CDKB1;2 cyclin-dependent kinase B1;2 (... Potri.006G113200
[exp]
14.24 0.8258
AT4G18590 Nucleic acid-binding, OB-fold-... Potri.010G239200
[exp]
19.59 0.8123
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Potri.003G104700
[exp]
20.27 0.8198
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Potri.006G275700
[exp]
23.68 0.7961
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Potri.016G070800
[exp]
26.72 0.8128
AT1G54690 HTA3 ,G-H2AX ,G... histone H2A 3, GAMMA H2AX, gam... Potri.005G040800
[exp]
32.07 0.7915
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.006G167600
[exp]
34.71 0.8159
AT5G56130 THO3, AtTEX1 Transducin/WD40 repeat-like su... Potri.001G470900
[exp]
37.81 0.7097

Potri.009G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.