Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58960 466 / 2e-159 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 176 / 6e-49 Plant protein of unknown function (DUF641) (.1) AT3G14870 139 / 2e-35 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G60680 137 / 2e-34 Plant protein of unknown function (DUF641) (.1) AT1G29300 130 / 3e-32 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 127 / 2e-31 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G30380 80 / 2e-15 Plant protein of unknown function (DUF641) (.1) AT4G34080 65 / 3e-11 Plant protein of unknown function (DUF641) (.1) AT5G12900 66 / 5e-11 unknown protein AT4G33320 57 / 8e-09 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145900 [exp] 179 / 3e-50 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 158 / 7e-42 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 150 / 1e-39 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 147 / 6e-38 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 143 / 1e-36 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G071000 [exp] 137 / 9e-35 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 134 / 2e-33 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.004G061600 [exp] 130 / 3e-32 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 118 / 4e-29 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016444 [exp] 533 / 0 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10040708 [exp] 256 / 8e-83 AT5G58960 252 / 3e-83 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 176 / 7e-49 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 174 / 3e-48 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 160 / 8e-43 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 159 / 1e-42 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 149 / 6e-39 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 149 / 1e-38 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 141 / 4e-36 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 132 / 9e-33 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [poplar] [flax] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Potri.009G041000.1 pacid=42772934 polypeptide=Potri.009G041000.1.p locus=Potri.009G041000 ID=Potri.009G041000.1.v4.1 annot-version=v4.1 ATGCCGTTGGAAACTTTCTATATAAACTCCTATGTTCGTTTGAGTTCTCTGCAGTACTCGTTGAGTCAAATTACTTTACTTGCAAATCTAATCCTATCCG ATCCGATCCCACCAGTATTAGAGACCATGTTCTCCGGTATCTTCCTTTGTTCCATGCGTCCTGACAGTGCAAGGAAGAAGAAAAGCAGCCAGCTGGAAGC AGAGGACAACATTAGCAGCAGCAGCAACAACAACCTTAACTTCTTATACTCCTTTCCATTAGACAGAGACCCAGTAGTTAGTGTGAAGCCAGCAAGGTTG ACCGCTTCACGATCTGGTCATAACCATAACCCCAGGAACTGTGAGGTAAAGCCAAAGAAGAAGGGAGAAATGGCAAACAAAATCTCATCCAATTTCTCCG ATCTAATCCAACGAGTAGCAGCTTCCTGTTTGCTCCATCCACTCGCCGCTGGTCGACAGGAATCTGGAAATAATGTTGCCGGAAATGGTGAAGAAGTGTG TGAATATGAAACGGATGAATGCGAGGAGTTGTCCGAAGAGGAGCAGGAAATGAGAGAGAAGGGAGGGAGAGTTAATGGTAATTGGGATTTTAATGTTACG AGCGGAATGGTGGTGCCGATGGAGAGAGTGATGGAGATGGAGATGCTGATGAATGAGGTGTTTGATTCGGTATCGGCGATGAAGAGGGCTTATGGGAGTT TACAAGAGGCGCATTGCCCGTGGGACCCGGAGAGGTTAAGGGTTGCCGATGTGGCGGTGGTAGGGGAGTTGAGGAGGTTGGCTTTTTTGAGAGAGAGATT TAGGAGGTGTGTTAGTGTTGGTAGTGATGGAGGGAGGAGGAGAGGTGTTGGTGTTGGTGGTGATGGAGTGGGGATGTTGAGGGAGGTTGTGGCGCCTTAT GAGGCTGCGGTGGAAGATCTGAAGAAGGAAGTGAAGGCGAGGGAGGTGGAGGTGGAGAATTTAAAGGAAAAGCTGAGGAGTGTTACTAGCTTGAGCAGTG ATGGGAGTGGAAAGAAGGGGAGGTCCCAGTCAAGGAGGAAAGTTAGCTGCTCTCTTGGTGTTCAAGTTGCAGCAGCCCCAGCCCCAGAGCTATTTGAATT AACGATGAGCCAAGTGAAAAGGACATCAAAGTCCTTCACGTCGCTTCTCCTGACCTTCATGCGTGCTGCCCACTGGGACATTGCTGCAGCCGTTCGTTCT ATTGAAGCTGCCACCACAACCACTGACAATTTGACCACCAGTACCACTGCTATCACCTCCACCATTGCAAGCCACCATGCCAAGTATGCTCTGGAGTCCT ACATTTCTCGCAAGGTCTTCCAAGGCTTTGACCATGAAACCTTCTACATGGATGGAAGCCTCTCCTCGCTTCTCAACCCAGACCAGTTCCGCCGTGACTG CTTTGCTCAGTATCGTGATATGAAGGCCATGGACCCCATTGAACTTCTTGGAATCTTGCCAACATGTCATTTTGGAAAATTCTGCTCCAAGAGGTACCTG GAAATTGTTCATCCGAAAATGGAGGAGTCCTTGTTCGGAAACTTGGAGCAGCGCCAGCAAGTACTCACTGGCAGCCATCCAAGGAGTGAGTTTTATGGAG AGTTCTTGGGGCTGGCCAAGGCCATTTGGTTGCTTCACTTGCTGGCCTTCTCACTCGACCCTGCACCAAGTCAATTCGAGGCAAGTAGGGGAGCTGAGTT TCATCCACAATATATGGAGAGTGTTGTGAAGTTTTCTAGTGGTCGGATTCCAGCTGGTCATATTGTGGGATTCCCTGTTAGCCCCGGATTCAAGCTTGGA AACAGATCGGTTATCAAGGCTAGTGTTTACCTATTTCCCAGAGCATGA
AA sequence Show only first row Show all	>Potri.009G041000.1 pacid=42772934 polypeptide=Potri.009G041000.1.p locus=Potri.009G041000 ID=Potri.009G041000.1.v4.1 annot-version=v4.1 MPLETFYINSYVRLSSLQYSLSQITLLANLILSDPIPPVLETMFSGIFLCSMRPDSARKKKSSQLEAEDNISSSSNNNLNFLYSFPLDRDPVVSVKPARL TASRSGHNHNPRNCEVKPKKKGEMANKISSNFSDLIQRVAASCLLHPLAAGRQESGNNVAGNGEEVCEYETDECEELSEEEQEMREKGGRVNGNWDFNVT SGMVVPMERVMEMEMLMNEVFDSVSAMKRAYGSLQEAHCPWDPERLRVADVAVVGELRRLAFLRERFRRCVSVGSDGGRRRGVGVGGDGVGMLREVVAPY EAAVEDLKKEVKAREVEVENLKEKLRSVTSLSSDGSGKKGRSQSRRKVSCSLGVQVAAAPAPELFELTMSQVKRTSKSFTSLLLTFMRAAHWDIAAAVRS IEAATTTTDNLTTSTTAITSTIASHHAKYALESYISRKVFQGFDHETFYMDGSLSSLLNPDQFRRDCFAQYRDMKAMDPIELLGILPTCHFGKFCSKRYL EIVHPKMEESLFGNLEQRQQVLTGSHPRSEFYGEFLGLAKAIWLLHLLAFSLDPAPSQFEASRGAEFHPQYMESVVKFSSGRIPAGHIVGFPVSPGFKLG NRSVIKASVYLFPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Potri.009G041000 [exp]	0	1
AT1G65920			Regulator of chromosome conden...		Potri.004G080900 [exp]	1.00	0.9315
AT5G41960			unknown protein		Potri.001G084600 [exp]	8.48	0.8754
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085800 [exp]	17.23	0.8433	Pt-CYP71.2
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	18.38	0.8322
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	21.21	0.8172
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.011G151200 [exp]	21.40	0.7338
AT2G46640			unknown protein		Potri.002G175300 [exp]	21.97	0.8532
					Potri.001G062301 [exp]	22.71	0.7975
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.017G016900 [exp]	24.16	0.7803
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	24.24	0.8360

Compare expression of checked genes

Potri.009G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.