Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37300 96 / 2e-25 MEE59 maternal effect embryo arrest 59 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049800 [exp] 90 / 6e-23 AT4G37300 128 / 8e-38 maternal effect embryo arrest 59 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018201 [exp] 162 / 8e-51 AT4G37300 105 / 3e-28 maternal effect embryo arrest 59 (.1) Lus10040706 [exp] 160 / 2e-50 AT4G37300 108 / 5e-30 maternal effect embryo arrest 59 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G041100.1 pacid=42772715 polypeptide=Potri.009G041100.1.p locus=Potri.009G041100 ID=Potri.009G041100.1.v4.1 annot-version=v4.1 ATGGAGTTCCACAAGAGGCCTAACAGGAGTGATGCTCACGTGTCAGTCGAGGAAGAGGCAAAACAAGAGGAGGAAACAAGAGGATATTTCGAGGGAATAG CTCCTAAGCGTCACTCTAAGCCTCAACGCAGTGAGTATTCCATTCAATACGTTGATACGCTCACCACTAATGGCGATCAAAGCTTCAACCCAGAATATGT TGAGTTTCAACGTCTCGAAACTGATCCTCAGAAAATAATTTCAAATGAAAGCAGCAAAGTGACTGATGAATTTGTAGAGACAGAGTATTACCAGGATCTC AACTGTGTTGACAAGCAACACCACACGACAGGAACAGGGTTCATCAAAACGGAGAACGAATATGGCAAGCGCTTCAGCCTAGCACCAGATTCTACATCCA GTTGCCATGCCTCTTGCAAAGGAAATCCAGCAACTAATGATTGGGTTCCAGCTGATGCTGATATGGTGACTTCCGCTTCAGACAAGCCCAAGAGGAGTGA CAATTGA
AA sequence Show only first row Show all	>Potri.009G041100.1 pacid=42772715 polypeptide=Potri.009G041100.1.p locus=Potri.009G041100 ID=Potri.009G041100.1.v4.1 annot-version=v4.1 MEFHKRPNRSDAHVSVEEEAKQEEETRGYFEGIAPKRHSKPQRSEYSIQYVDTLTTNGDQSFNPEYVEFQRLETDPQKIISNESSKVTDEFVETEYYQDL NCVDKQHHTTGTGFIKTENEYGKRFSLAPDSTSSCHASCKGNPATNDWVPADADMVTSASDKPKRSDN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	6.40	0.8935
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	7.34	0.9171
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	7.54	0.9293
AT5G46390			Peptidase S41 family protein (...		Potri.011G078700 [exp]	8.00	0.8862
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231525 [exp]	8.66	0.9020
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	9.48	0.8789
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.008G120400 [exp]	10.24	0.9115
AT1G36320			unknown protein		Potri.005G170400 [exp]	12.04	0.9252
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	13.49	0.9116
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	14.14	0.9260

Compare expression of checked genes

Potri.009G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.